Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D5R83_RS05875 Genome accession   NZ_CP042211
Coordinates   1203058..1203462 (-) Length   134 a.a.
NCBI ID   WP_000599159.1    Uniprot ID   -
Organism   Helicobacter pylori strain B128 7.13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198058..1208462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R83_RS05850 (D5R83_05850) recJ 1198809..1200359 (+) 1551 WP_000810776.1 single-stranded-DNA-specific exonuclease RecJ -
  D5R83_RS05855 (D5R83_05855) - 1200359..1201255 (+) 897 WP_001117136.1 RluA family pseudouridine synthase -
  D5R83_RS05860 (D5R83_05860) - 1201388..1201948 (-) 561 WP_000037134.1 hypothetical protein -
  D5R83_RS05865 (D5R83_05865) - 1201932..1202270 (-) 339 WP_000699916.1 hypothetical protein -
  D5R83_RS05870 (D5R83_05870) - 1202458..1202931 (-) 474 WP_013195909.1 tetratricopeptide repeat protein -
  D5R83_RS05875 (D5R83_05875) dprB 1203058..1203462 (-) 405 WP_000599159.1 Holliday junction resolvase RuvX Machinery gene
  D5R83_RS05880 (D5R83_05880) dprA 1203459..1204259 (-) 801 WP_000835251.1 DNA-processing protein DprA Machinery gene
  D5R83_RS05885 (D5R83_05885) minE 1204266..1204499 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D5R83_RS05890 (D5R83_05890) minD 1204496..1205302 (-) 807 WP_001019050.1 septum site-determining protein MinD -
  D5R83_RS05895 (D5R83_05895) ilvC 1205326..1206318 (-) 993 WP_001207748.1 ketol-acid reductoisomerase -
  D5R83_RS05905 (D5R83_05905) - 1206567..1207349 (+) 783 WP_001168242.1 NAD+ synthase -
  D5R83_RS05910 (D5R83_05910) - 1207346..1208284 (+) 939 WP_000833945.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15226.77 Da        Isoelectric Point: 8.8525

>NTDB_id=375999 D5R83_RS05875 WP_000599159.1 1203058..1203462(-) (dprB) [Helicobacter pylori strain B128 7.13]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=375999 D5R83_RS05875 WP_000599159.1 1203058..1203462(-) (dprB) [Helicobacter pylori strain B128 7.13]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment