Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D5R83_RS00275 | Genome accession | NZ_CP042211 |
| Coordinates | 62561..63136 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203595.1 | Uniprot ID | K2JY70 |
| Organism | Helicobacter pylori strain B128 7.13 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57561..68136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R83_RS00250 (D5R83_00250) | uvrD | 58252..60297 (+) | 2046 | WP_000505301.1 | DNA helicase UvrD | - |
| D5R83_RS00255 (D5R83_00255) | flgA | 60294..60950 (+) | 657 | WP_000697649.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D5R83_RS00260 (D5R83_00260) | - | 60960..61523 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| D5R83_RS00265 (D5R83_00265) | coaD | 61523..61996 (+) | 474 | WP_001169256.1 | pantetheine-phosphate adenylyltransferase | - |
| D5R83_RS00270 (D5R83_00270) | tmk | 61998..62573 (+) | 576 | WP_000289050.1 | dTMP kinase | - |
| D5R83_RS00275 (D5R83_00275) | comFC | 62561..63136 (+) | 576 | WP_001203595.1 | ComF family protein | Machinery gene |
| D5R83_RS00280 (D5R83_00280) | - | 63169..65208 (+) | 2040 | WP_001147711.1 | N-6 DNA methylase | - |
| D5R83_RS08320 | - | 65205..66420 (+) | 1216 | Protein_55 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21324.87 Da Isoelectric Point: 8.6712
>NTDB_id=375991 D5R83_RS00275 WP_001203595.1 62561..63136(+) (comFC) [Helicobacter pylori strain B128 7.13]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=375991 D5R83_RS00275 WP_001203595.1 62561..63136(+) (comFC) [Helicobacter pylori strain B128 7.13]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.751 |
100 |
0.361 |