Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   G4G26_RS20485 Genome accession   NZ_CP049924
Coordinates   4008121..4008915 (-) Length   264 a.a.
NCBI ID   WP_088467475.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4003121..4013915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS20450 (G4G26_20515) - 4003252..4003806 (-) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -
  G4G26_RS20455 (G4G26_20520) - 4003990..4004625 (-) 636 WP_041520538.1 SdpI family protein -
  G4G26_RS20460 (G4G26_20525) - 4004625..4004909 (-) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  G4G26_RS20465 (G4G26_20530) rocR 4005140..4006525 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  G4G26_RS20470 (G4G26_20535) - 4006507..4006665 (-) 159 Protein_4007 ATP-binding protein -
  G4G26_RS20475 (G4G26_20540) - 4006687..4006816 (-) 130 Protein_4008 hypothetical protein -
  G4G26_RS20480 (G4G26_20545) htrA 4006837..4008039 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  G4G26_RS20485 (G4G26_20550) vicX 4008121..4008915 (-) 795 WP_088467475.1 MBL fold metallo-hydrolase Regulator
  G4G26_RS20490 (G4G26_20555) walI 4008937..4009779 (-) 843 WP_128422530.1 WalRK two-component regulatory system regulator WalI -
  G4G26_RS20495 (G4G26_20560) walH 4009766..4011133 (-) 1368 WP_046664054.1 WalRK two-component regulatory system regulator WalH -
  G4G26_RS20500 (G4G26_20565) walK 4011123..4012958 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  G4G26_RS20505 (G4G26_20570) walR 4012966..4013673 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29279.27 Da        Isoelectric Point: 5.8036

>NTDB_id=375712 G4G26_RS20485 WP_088467475.1 4008121..4008915(-) (vicX) [Bacillus subtilis strain So1b]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDIGHVSNEDAALALTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=375712 G4G26_RS20485 WP_088467475.1 4008121..4008915(-) (vicX) [Bacillus subtilis strain So1b]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACATCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGCTGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGTCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.053

99.242

0.527