Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   G4G26_RS06095 Genome accession   NZ_CP049924
Coordinates   1189197..1191026 (+) Length   609 a.a.
NCBI ID   WP_182932245.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184197..1196026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS06060 (G4G26_06080) yjbC 1184870..1185448 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  G4G26_RS06065 (G4G26_06085) spx 1185629..1186024 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  G4G26_RS06070 (G4G26_06090) yjbE 1186067..1186723 (-) 657 WP_003232944.1 TerC family protein -
  G4G26_RS06075 (G4G26_06095) - 1186892..1187032 (+) 141 WP_119122854.1 hypothetical protein -
  G4G26_RS06080 (G4G26_06100) mecA 1186999..1187655 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  G4G26_RS06085 (G4G26_06105) - 1187650..1187772 (-) 123 WP_021479547.1 hypothetical protein -
  G4G26_RS06090 (G4G26_06110) coiA 1187816..1188967 (+) 1152 WP_032677406.1 competence protein CoiA Machinery gene
  G4G26_RS06095 (G4G26_06115) pepF 1189197..1191026 (+) 1830 WP_182932245.1 oligoendopeptidase F Regulator
  G4G26_RS06100 (G4G26_06120) - 1191064..1191231 (-) 168 WP_003244944.1 hypothetical protein -
  G4G26_RS06105 (G4G26_06125) spxH 1191545..1192444 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  G4G26_RS06110 (G4G26_06130) yjbI 1192441..1192839 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  G4G26_RS06115 (G4G26_06135) cwlQ 1193094..1193828 (-) 735 WP_015715668.1 bifunctional muramidase/murein lytic transglycosylase -
  G4G26_RS06120 (G4G26_06140) yjbK 1193843..1194415 (-) 573 WP_015715669.1 CYTH domain-containing protein -
  G4G26_RS06125 (G4G26_06145) - 1194540..1194908 (+) 369 WP_015715670.1 hypothetical protein -
  G4G26_RS06130 (G4G26_06150) yjbM 1194937..1195572 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70075.91 Da        Isoelectric Point: 5.1562

>NTDB_id=375618 G4G26_RS06095 WP_182932245.1 1189197..1191026(+) (pepF) [Bacillus subtilis strain So1b]
MAEEKKANQLSDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=375618 G4G26_RS06095 WP_182932245.1 1189197..1191026(+) (pepF) [Bacillus subtilis strain So1b]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGTCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCTTCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAGAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTTAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATTCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGCGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476

Multiple sequence alignment