Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   G4G26_RS02410 Genome accession   NZ_CP049924
Coordinates   478865..479299 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain So1b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473865..484299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS02380 (G4G26_02390) ydaD 474515..475375 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  G4G26_RS02385 (G4G26_02395) lyxE 475391..475894 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  G4G26_RS02390 (G4G26_02400) ydaF 475980..476531 (+) 552 WP_003246691.1 GNAT family protein -
  G4G26_RS02395 (G4G26_02405) ydaG 476609..477031 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  G4G26_RS02400 (G4G26_02410) amj 477537..478346 (+) 810 WP_003234394.1 lipid II flippase Amj -
  G4G26_RS02405 (G4G26_02415) ydzA 478390..478680 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  G4G26_RS02410 (G4G26_02420) lrpC 478865..479299 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  G4G26_RS02415 (G4G26_02425) topB 479364..481547 (+) 2184 WP_038427393.1 DNA topoisomerase III -
  G4G26_RS02420 (G4G26_02430) epsJ 481750..482838 (+) 1089 WP_003246551.1 lipoprotein -
  G4G26_RS02425 (G4G26_02435) epsK 482819..483670 (+) 852 WP_163260112.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=375589 G4G26_RS02410 WP_003246585.1 478865..479299(+) (lrpC) [Bacillus subtilis strain So1b]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=375589 G4G26_RS02410 WP_003246585.1 478865..479299(+) (lrpC) [Bacillus subtilis strain So1b]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment