Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   G9W36_RS13215 Genome accession   NZ_CP049839
Coordinates   2677727..2678383 (-) Length   218 a.a.
NCBI ID   WP_219891808.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC-455U/190220     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672727..2683383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W36_RS13185 (G9W36_13145) yecA 2673979..2674644 (-) 666 WP_000847877.1 UPF0149 family protein YecA -
  G9W36_RS13205 (G9W36_13165) pgsA 2675293..2675841 (-) 549 WP_001538881.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G9W36_RS13210 (G9W36_13170) uvrC 2675898..2677730 (-) 1833 WP_001773939.1 excinuclease ABC subunit UvrC Machinery gene
  G9W36_RS13215 (G9W36_13175) letA 2677727..2678383 (-) 657 WP_219891808.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  G9W36_RS13220 (G9W36_13180) yecU 2678679..2678855 (+) 177 WP_001307856.1 protein YecU -
  G9W36_RS13225 (G9W36_13185) yecF 2678842..2679066 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  G9W36_RS13230 (G9W36_13190) sdiA 2679134..2679856 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  G9W36_RS13235 (G9W36_13195) tcyN 2680086..2680838 (-) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  G9W36_RS13240 (G9W36_13200) tcyL 2680835..2681503 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  G9W36_RS13245 (G9W36_13205) dcyD 2681518..2682504 (-) 987 WP_001128237.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23763.49 Da        Isoelectric Point: 6.6397

>NTDB_id=375350 G9W36_RS13215 WP_219891808.1 2677727..2678383(-) (letA) [Escherichia coli strain UPEC-455U/190220]
MINVLLVDDHELVRAGIRGILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=375350 G9W36_RS13215 WP_219891808.1 2677727..2678383(-) (letA) [Escherichia coli strain UPEC-455U/190220]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGAGGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTTAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.242

94.954

0.477
  letA Legionella pneumophila strain ERS1305867

50.242

94.954

0.477

Multiple sequence alignment