Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   FPT06_RS09840 Genome accession   NZ_CP041994
Coordinates   1945506..1946855 (+) Length   449 a.a.
NCBI ID   WP_013730249.1    Uniprot ID   -
Organism   Streptococcus suis strain INT-01     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940506..1951855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS09815 (FPT06_09815) - 1941617..1942276 (-) 660 WP_009910247.1 amino acid ABC transporter permease -
  FPT06_RS09820 (FPT06_09820) - 1942291..1942989 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  FPT06_RS09825 (FPT06_09825) - 1943004..1943843 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  FPT06_RS09830 (FPT06_09830) - 1943854..1944615 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  FPT06_RS09835 (FPT06_09835) micA 1944809..1945513 (+) 705 WP_004298854.1 response regulator YycF Regulator
  FPT06_RS09840 (FPT06_09840) micB 1945506..1946855 (+) 1350 WP_013730249.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FPT06_RS09845 (FPT06_09845) vicX 1946862..1947665 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  FPT06_RS09850 (FPT06_09850) - 1947904..1949160 (-) 1257 WP_002936184.1 ISL3-like element ISSsu6 family transposase -
  FPT06_RS09860 (FPT06_09860) - 1949825..1951027 (-) 1203 Protein_1856 IS110 family transposase -
  FPT06_RS09865 (FPT06_09865) - 1951266..1951721 (+) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51071.07 Da        Isoelectric Point: 4.5202

>NTDB_id=375252 FPT06_RS09840 WP_013730249.1 1945506..1946855(+) (micB) [Streptococcus suis strain INT-01]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IAIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKTDLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=375252 FPT06_RS09840 WP_013730249.1 1945506..1946855(+) (micB) [Streptococcus suis strain INT-01]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATCACAGATATGGCGAATTCTCTTAATGATCTGTCCGAA
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACGCGTCTGACTTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGGCTTTCTAGCCAAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGCGATTGATCACACCAATGAAAACGAAGAATTTTTGACTTTACGTGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
CCTGATTTCTGGCTTGGTAGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTGTTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGGGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
CTTATCGCGTATTGATAATCAAGTTGGTCAGATAGATGTTGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATACTGATTCTGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTAGATAATATCTTAAATAATGCCATTAAATATTCGCCAGATGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTATCAGACGAAGGTCTGGGGATTCCGAAAA
CAGATTTACCTAGAATTTTTGACCGATTTTATCGCGTAGACAAGGCACGATCTCGTGCCCAAGGCGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTGAAACAACATAAGGGCTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTGGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.183

97.105

0.682
  vicK Streptococcus mutans UA159

70.471

89.755

0.633

Multiple sequence alignment