Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   FPT06_RS07630 Genome accession   NZ_CP041994
Coordinates   1511917..1512606 (+) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain INT-01     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506917..1517606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS07605 (FPT06_07605) - 1507246..1508589 (+) 1344 WP_002936685.1 DEAD/DEAH box helicase -
  FPT06_RS07610 (FPT06_07610) - 1508607..1508831 (+) 225 WP_002936682.1 DUF4059 family protein -
  FPT06_RS07615 (FPT06_07615) trxB 1508845..1509762 (+) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  FPT06_RS07620 (FPT06_07620) - 1509772..1510311 (+) 540 WP_013730515.1 DUF177 domain-containing protein -
  FPT06_RS07625 (FPT06_07625) gndA 1510408..1511835 (+) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  FPT06_RS07630 (FPT06_07630) covR 1511917..1512606 (+) 690 WP_002942700.1 DNA-binding response regulator Regulator
  FPT06_RS07635 (FPT06_07635) - 1512696..1513826 (+) 1131 WP_013730514.1 AI-2E family transporter -
  FPT06_RS07640 (FPT06_07640) nrdR 1513898..1514389 (+) 492 WP_002938341.1 transcriptional regulator NrdR -
  FPT06_RS07645 (FPT06_07645) - 1514376..1515527 (+) 1152 WP_002938340.1 hypothetical protein -
  FPT06_RS07650 (FPT06_07650) dnaI 1515527..1516426 (+) 900 WP_002938337.1 primosomal protein DnaI -
  FPT06_RS07655 (FPT06_07655) - 1516423..1517136 (+) 714 WP_009910601.1 NADPH-dependent oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=375243 FPT06_RS07630 WP_002942700.1 1511917..1512606(+) (covR) [Streptococcus suis strain INT-01]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=375243 FPT06_RS07630 WP_002942700.1 1511917..1512606(+) (covR) [Streptococcus suis strain INT-01]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment