Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FP435_RS08025 Genome accession   NZ_CP041987
Coordinates   1507932..1508450 (-) Length   172 a.a.
NCBI ID   WP_265483760.1    Uniprot ID   -
Organism   Lactobacillus sp. PV037     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1502932..1513450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP435_RS08005 (FP435_07925) rplI 1504093..1504548 (-) 456 WP_265483758.1 50S ribosomal protein L9 -
  FP435_RS08010 (FP435_07930) - 1504551..1506580 (-) 2030 Protein_1432 DHH family phosphoesterase -
  FP435_RS08015 (FP435_07935) - 1506653..1507570 (-) 918 WP_265483759.1 magnesium transporter CorA family protein -
  FP435_RS08020 (FP435_07940) rpsR 1507672..1507908 (-) 237 WP_008471430.1 30S ribosomal protein S18 -
  FP435_RS08025 (FP435_07945) ssb 1507932..1508450 (-) 519 WP_265483760.1 single-stranded DNA-binding protein Machinery gene
  FP435_RS08030 (FP435_07950) rpsF 1508484..1508780 (-) 297 WP_265483761.1 30S ribosomal protein S6 -
  FP435_RS08035 (FP435_07955) gyrA 1508955..1511417 (-) 2463 WP_265483762.1 DNA gyrase subunit A -
  FP435_RS08040 (FP435_07960) gyrB 1511427..1513388 (-) 1962 WP_265483763.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18702.31 Da        Isoelectric Point: 4.4997

>NTDB_id=375201 FP435_RS08025 WP_265483760.1 1507932..1508450(-) (ssb) [Lactobacillus sp. PV037]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRNYTNSQGERQTDFINCVIWRKAAETFANFTSKGSLVGVEGSIQTR
SYDDKDGKRVYVTEVIVSDFSFLESRRERENRQANGGGYPQPTPSTNQPNTNNFGGNTAPGTGNNGASAPQPQDPFADSN
ESIDISDNDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=375201 FP435_RS08025 WP_265483760.1 1507932..1508450(-) (ssb) [Lactobacillus sp. PV037]
ATGATTAATAATGTTGTACTAGTTGGCCGATTAACACGTGACCCTGATTTACGTACTACTGGAAGTGGAATATCAGTAGC
TACGTTTACTTTGGCTGTAGATAGAAATTATACTAATAGTCAGGGTGAACGCCAAACTGACTTTATCAACTGTGTTATTT
GGCGTAAAGCAGCAGAAACTTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTGTTGAAGGTAGTATTCAAACTAGA
AGTTATGATGATAAAGATGGAAAAAGAGTTTATGTTACTGAGGTAATTGTAAGTGATTTTTCATTCTTAGAATCACGTCG
TGAACGTGAAAATCGTCAAGCAAATGGTGGTGGGTATCCACAACCAACTCCAAGCACAAACCAACCAAATACAAATAATT
TTGGTGGTAACACTGCTCCGGGAACTGGAAATAATGGAGCATCGGCTCCACAACCACAAGATCCATTTGCTGATTCTAAT
GAATCTATTGATATTTCAGATAATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.581
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.575

100

0.512

Multiple sequence alignment