Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FP432_RS06150 Genome accession   NZ_CP041982
Coordinates   1208565..1209086 (-) Length   173 a.a.
NCBI ID   WP_265488442.1    Uniprot ID   -
Organism   Lactobacillus sp. PV034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1203565..1214086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP432_RS06130 (FP432_06045) rplI 1204659..1205114 (-) 456 WP_265488439.1 50S ribosomal protein L9 -
  FP432_RS06135 (FP432_06050) - 1205126..1207144 (-) 2019 WP_265488440.1 DHH family phosphoesterase -
  FP432_RS06140 (FP432_06055) - 1207267..1208187 (-) 921 WP_265488441.1 magnesium transporter CorA family protein -
  FP432_RS06145 (FP432_06060) rpsR 1208304..1208540 (-) 237 WP_008471430.1 30S ribosomal protein S18 -
  FP432_RS06150 (FP432_06065) ssb 1208565..1209086 (-) 522 WP_265488442.1 single-stranded DNA-binding protein Machinery gene
  FP432_RS06155 (FP432_06070) rpsF 1209122..1209418 (-) 297 WP_117118256.1 30S ribosomal protein S6 -
  FP432_RS06160 (FP432_06075) gyrA 1209594..1212086 (-) 2493 WP_265488443.1 DNA gyrase subunit A -
  FP432_RS06165 (FP432_06080) gyrB 1212101..1214062 (-) 1962 WP_265488444.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18860.43 Da        Isoelectric Point: 4.5704

>NTDB_id=375163 FP432_RS06150 WP_265488442.1 1208565..1209086(-) (ssb) [Lactobacillus sp. PV034]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFVNFTSKGSLVGIQGRLQSR
SYDNKDGQRVYVTEVVVDNFSFLESRRDRENRQANGGNTNFAPQSNDAPSTNNFGGNSAPSTNNATPSSTPQPQDPFADS
SNSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=375163 FP432_RS06150 WP_265488442.1 1208565..1209086(-) (ssb) [Lactobacillus sp. PV034]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACTACTGGGAGTGGAATCTCAGTTGC
TACGTTTACCCTTGCTGTGGATCGACAATATACCAATAGCCAAGGAGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCTGCAGAGAATTTTGTAAACTTTACTTCAAAAGGATCACTTGTTGGAATTCAGGGTAGACTGCAAAGTAGA
AGCTATGATAATAAAGATGGGCAACGTGTTTATGTGACTGAAGTAGTCGTAGATAACTTCTCATTTTTAGAATCACGACG
TGATCGTGAGAATCGTCAAGCTAATGGTGGTAACACAAACTTTGCTCCACAAAGTAATGATGCCCCAAGCACAAATAACT
TTGGAGGCAATAGTGCTCCAAGCACTAATAATGCTACTCCAAGTTCTACCCCACAACCACAAGATCCATTTGCAGATTCA
AGCAATTCAATTGATATTTCAGATGATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.428

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

52

100

0.526

Multiple sequence alignment