Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FP432_RS03540 Genome accession   NZ_CP041982
Coordinates   692160..692483 (-) Length   107 a.a.
NCBI ID   WP_265489472.1    Uniprot ID   -
Organism   Lactobacillus sp. PV034     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 687160..697483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP432_RS03515 (FP432_03490) - 688595..689779 (-) 1185 WP_265489467.1 acetate/propionate family kinase -
  FP432_RS03520 (FP432_03495) - 689798..690802 (-) 1005 WP_265489468.1 class I SAM-dependent methyltransferase -
  FP432_RS03525 (FP432_03500) - 691001..691564 (-) 564 WP_265489469.1 ComGF family competence protein -
  FP432_RS03530 (FP432_03505) - 691570..691770 (-) 201 WP_265489470.1 type II secretion system protein -
  FP432_RS03535 (FP432_03510) - 691763..692188 (-) 426 WP_265489471.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FP432_RS03540 (FP432_03515) comGC 692160..692483 (-) 324 WP_265489472.1 competence type IV pilus major pilin ComGC Machinery gene
  FP432_RS03545 (FP432_03520) - 692495..693496 (-) 1002 WP_265489473.1 type II secretion system F family protein -
  FP432_RS03550 (FP432_03525) comGA 693462..694442 (-) 981 WP_265489474.1 competence type IV pilus ATPase ComGA -
  FP432_RS03555 (FP432_03530) - 694618..695259 (-) 642 WP_265489475.1 uracil-DNA glycosylase -
  FP432_RS03560 (FP432_03535) - 695431..696162 (-) 732 WP_265489476.1 YebC/PmpR family DNA-binding transcriptional regulator -
  FP432_RS03565 (FP432_03540) - 696240..696743 (-) 504 WP_265489477.1 VanZ family protein -
  FP432_RS03570 (FP432_03545) - 696913..697170 (+) 258 WP_265489478.1 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12144.24 Da        Isoelectric Point: 10.3366

>NTDB_id=375158 FP432_RS03540 WP_265489472.1 692160..692483(-) (comGC) [Lactobacillus sp. PV034]
MKRLKNRLKKNETVKGFTLIEMVIVIAIIAILILLIVPSLTKQKERAENRTDEAFRSTLQTQVELADDKNITLEALNKEG
YISNRQLEKANEKGITIVNGHVTEAKK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=375158 FP432_RS03540 WP_265489472.1 692160..692483(-) (comGC) [Lactobacillus sp. PV034]
ATGAAAAGATTAAAGAACAGACTAAAAAAGAATGAAACGGTTAAAGGATTTACCTTAATTGAAATGGTAATAGTAATTGC
GATTATTGCGATTTTAATCTTATTAATCGTGCCAAGTTTAACTAAACAAAAAGAACGAGCAGAAAATCGAACTGATGAAG
CATTTAGATCTACTTTACAAACTCAAGTAGAACTAGCGGATGATAAAAATATTACTTTAGAAGCTTTAAATAAAGAAGGA
TATATTTCTAATCGCCAATTAGAGAAAGCAAATGAAAAAGGGATCACAATAGTAAATGGCCATGTTACTGAAGCAAAGAA
GTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(15-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

57.143

85.047

0.486
  comGC/cglC Streptococcus mitis SK321

42.105

88.785

0.374

Multiple sequence alignment