Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilX   Type   Machinery gene
Locus tag   FPL17_RS15860 Genome accession   NZ_CP041970
Coordinates   3446698..3447450 (+) Length   250 a.a.
NCBI ID   WP_159886106.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3441698..3452450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS15835 (FPL17_16025) comE 3443181..3443732 (+) 552 WP_159886098.1 type IV pilin protein Machinery gene
  FPL17_RS15840 (FPL17_16030) pilE 3443732..3444166 (+) 435 WP_159886100.1 type IV pilin protein Machinery gene
  FPL17_RS15845 (FPL17_16035) - 3444641..3445189 (+) 549 WP_159886908.1 GspH/FimT family pseudopilin -
  FPL17_RS15850 (FPL17_16040) pilV 3445186..3445674 (+) 489 WP_159886102.1 type IV pilus modification protein PilV Machinery gene
  FPL17_RS15855 (FPL17_16045) - 3445676..3446701 (+) 1026 WP_159886104.1 PilW family protein -
  FPL17_RS15860 (FPL17_16050) pilX 3446698..3447450 (+) 753 WP_159886106.1 pilus assembly PilX family protein Machinery gene
  FPL17_RS15865 (FPL17_16055) - 3447463..3451968 (+) 4506 WP_159886108.1 PilC/PilY family type IV pilus protein -

Sequence


Protein


Download         Length: 250 a.a.        Molecular weight: 27006.64 Da        Isoelectric Point: 7.6634

>NTDB_id=375101 FPL17_RS15860 WP_159886106.1 3446698..3447450(+) (pilX) [Acinetobacter dispersus strain NCCP 16014]
MMHTQRGSTLIVVLMIVLMITIVGTLAIRQSISSLKLVSNHQMQILLAQNADTALMYFQDPSTQQNLASANGVVGFFKNE
NNKNAELVFCFSGTDPFALGKAGYRLNSSTFEPLATNGGACKADPNNAANDTASQSSGRKQVVTQVYIKREASATAPFAD
LSRGTEVLGAKTENNIRLRVYVVSVMQGLLTSDALFTADNDIKKGCLTKSIDNNGANDVATCLKQNTEKPIYSIQVAEYR
FLSDFEPSSS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=375101 FPL17_RS15860 WP_159886106.1 3446698..3447450(+) (pilX) [Acinetobacter dispersus strain NCCP 16014]
ATGATGCATACTCAACGCGGTTCTACGTTGATTGTCGTGCTGATGATTGTACTGATGATTACGATCGTCGGCACACTGGC
GATTCGGCAAAGTATTAGCTCGCTTAAATTGGTGAGTAACCATCAAATGCAAATATTATTGGCACAAAATGCAGATACAG
CATTGATGTATTTTCAAGATCCAAGTACTCAGCAGAATTTGGCCTCTGCCAATGGTGTTGTCGGGTTCTTTAAAAATGAA
AATAACAAAAATGCGGAACTGGTCTTTTGTTTCTCAGGCACAGATCCATTTGCGCTTGGCAAAGCAGGTTATCGTTTAAA
TAGTTCAACATTTGAACCCCTGGCAACCAATGGCGGTGCGTGTAAAGCTGATCCAAATAATGCAGCAAATGATACAGCAT
CCCAGTCAAGTGGCCGAAAACAGGTCGTTACTCAGGTTTATATCAAAAGAGAGGCCTCTGCCACAGCACCTTTTGCTGAT
CTTTCTCGTGGTACAGAAGTACTTGGCGCTAAAACTGAAAACAATATTCGCTTAAGAGTTTATGTTGTATCGGTCATGCA
GGGTTTACTCACTTCTGATGCTTTATTTACCGCAGATAATGATATTAAAAAAGGTTGTTTAACCAAGAGTATCGACAATA
ACGGCGCCAACGATGTTGCCACTTGTTTAAAACAAAATACAGAAAAACCGATATATAGCATACAAGTCGCAGAATATCGT
TTCTTGTCTGACTTTGAACCTTCGAGTTCATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

50.806

99.2

0.504


Multiple sequence alignment