Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FO269_RS05995 | Genome accession | NZ_CP041944 |
| Coordinates | 1125799..1126395 (+) | Length | 198 a.a. |
| NCBI ID | WP_003568462.1 | Uniprot ID | A0A0C9PXZ6 |
| Organism | Lacticaseibacillus paracasei strain NJ | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1120799..1131395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO269_RS05975 (FO269_05975) | gyrA | 1121300..1123921 (+) | 2622 | WP_003584054.1 | DNA gyrase subunit A | - |
| FO269_RS05980 (FO269_05980) | deoC | 1124026..1124730 (-) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| FO269_RS05985 (FO269_05985) | ssb | 1124913..1125344 (+) | 432 | WP_003568458.1 | single-stranded DNA-binding protein | - |
| FO269_RS05990 (FO269_05990) | rpsF | 1125472..1125768 (+) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| FO269_RS05995 (FO269_05995) | ssb | 1125799..1126395 (+) | 597 | WP_003568462.1 | single-stranded DNA-binding protein | Machinery gene |
| FO269_RS06000 (FO269_06000) | rpsR | 1126482..1126718 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| FO269_RS06005 (FO269_06005) | - | 1127160..1128638 (+) | 1479 | WP_003568469.1 | cytochrome ubiquinol oxidase subunit I | - |
| FO269_RS06010 (FO269_06010) | cydB | 1128631..1129650 (+) | 1020 | WP_003584062.1 | cytochrome d ubiquinol oxidase subunit II | - |
| FO269_RS06015 (FO269_06015) | - | 1129778..1130697 (-) | 920 | Protein_1074 | IS30 family transposase | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21138.87 Da Isoelectric Point: 4.9056
>NTDB_id=374804 FO269_RS05995 WP_003568462.1 1125799..1126395(+) (ssb) [Lacticaseibacillus paracasei strain NJ]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=374804 FO269_RS05995 WP_003568462.1 1125799..1126395(+) (ssb) [Lacticaseibacillus paracasei strain NJ]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTTACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCAATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTTACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCAATCGACATTTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.485 |
100 |
0.485 |