Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSEL_RS05270 Genome accession   NC_014219
Coordinates   1186659..1187366 (+) Length   235 a.a.
NCBI ID   WP_013171964.1    Uniprot ID   -
Organism   [Bacillus] selenitireducens MLS10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181659..1192366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS05255 (Bsel_1016) - 1183386..1184357 (-) 972 WP_013171961.1 LCP family protein -
  BSEL_RS05260 (Bsel_1017) - 1184496..1185128 (-) 633 WP_013171962.1 YigZ family protein -
  BSEL_RS05265 (Bsel_1018) degS 1185369..1186505 (+) 1137 WP_013171963.1 sensor histidine kinase Regulator
  BSEL_RS05270 (Bsel_1019) degU 1186659..1187366 (+) 708 WP_013171964.1 response regulator transcription factor Regulator
  BSEL_RS05275 (Bsel_1020) - 1187580..1188440 (+) 861 WP_013171965.1 DegV family protein -
  BSEL_RS05280 (Bsel_1021) - 1188705..1190258 (+) 1554 WP_013171966.1 DEAD/DEAH box helicase -
  BSEL_RS05285 (Bsel_1022) - 1190346..1191320 (+) 975 WP_013171967.1 nuclease-related domain-containing protein -
  BSEL_RS05290 (Bsel_1023) - 1191317..1192066 (+) 750 WP_013171968.1 ComF family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26446.30 Da        Isoelectric Point: 6.1608

>NTDB_id=37478 BSEL_RS05270 WP_013171964.1 1186659..1187366(+) (degU) [[Bacillus] selenitireducens MLS10]
MENQVNQDTLRILLIDDHQLFREGVKRILTMEPGLEVVAEGNDGEDVVDLVRQNKPDVVLMDINMPGMNGVDATKTLLKS
FPNVRVLILSIHDDESYVTHVLKTGASGYLLKEMDTEALIEAVKVVGNGGSYIHPKVTHNLIKEYRRLANETGNNGEIGF
REVEYRRPLHLLTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKNGWVKVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=37478 BSEL_RS05270 WP_013171964.1 1186659..1187366(+) (degU) [[Bacillus] selenitireducens MLS10]
ATGGAAAATCAAGTAAACCAGGATACGTTACGGATATTATTGATTGACGATCATCAACTGTTTCGTGAAGGAGTCAAACG
CATTTTGACAATGGAACCGGGACTCGAAGTCGTTGCGGAAGGAAATGACGGGGAAGACGTCGTCGATCTCGTCAGACAAA
ATAAGCCGGATGTGGTCCTGATGGATATCAATATGCCGGGGATGAACGGGGTAGATGCAACAAAGACCCTTCTCAAATCG
TTCCCTAACGTCCGTGTGCTGATTCTTTCGATTCATGATGATGAATCGTATGTGACGCACGTCCTGAAAACCGGCGCCTC
AGGCTATCTGTTAAAAGAAATGGATACGGAAGCGCTGATTGAAGCGGTGAAGGTCGTCGGCAACGGCGGCTCCTATATCC
ATCCGAAGGTGACGCATAATCTGATCAAAGAGTACCGGCGCCTTGCGAATGAAACAGGGAATAACGGCGAGATCGGGTTC
CGCGAAGTGGAATACCGTCGTCCGCTCCATCTTTTGACGCGTCGCGAGTGCGAAGTCCTGCAGCTTATGACAGATGGCAA
GAGTAACCGTTCGATCGGGGAAGCGCTTTACATTTCCGAGAAGACGGTCAAGAACCACGTGAGTAACATCTTGCAGAAGA
TGGGGATGAACGACCGGACACAGGCCGTCGTTGACGCCATCAAGAATGGCTGGGTCAAAGTGAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)

Bacterial regulatory proteins, luxR family (GerE)

(171-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

69.058

94.894

0.655

Multiple sequence alignment