Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BSEL_RS05265 Genome accession   NC_014219
Coordinates   1185369..1186505 (+) Length   378 a.a.
NCBI ID   WP_013171963.1    Uniprot ID   D6Y0E7
Organism   [Bacillus] selenitireducens MLS10     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180369..1191505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS05250 (Bsel_1015) - 1180911..1183163 (+) 2253 WP_013171960.1 phosphodiester glycosidase family protein -
  BSEL_RS05255 (Bsel_1016) - 1183386..1184357 (-) 972 WP_013171961.1 LCP family protein -
  BSEL_RS05260 (Bsel_1017) - 1184496..1185128 (-) 633 WP_013171962.1 YigZ family protein -
  BSEL_RS05265 (Bsel_1018) degS 1185369..1186505 (+) 1137 WP_013171963.1 sensor histidine kinase Regulator
  BSEL_RS05270 (Bsel_1019) degU 1186659..1187366 (+) 708 WP_013171964.1 response regulator transcription factor Regulator
  BSEL_RS05275 (Bsel_1020) - 1187580..1188440 (+) 861 WP_013171965.1 DegV family protein -
  BSEL_RS05280 (Bsel_1021) - 1188705..1190258 (+) 1554 WP_013171966.1 DEAD/DEAH box helicase -
  BSEL_RS05285 (Bsel_1022) - 1190346..1191320 (+) 975 WP_013171967.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 43624.76 Da        Isoelectric Point: 5.0310

>NTDB_id=37477 BSEL_RS05265 WP_013171963.1 1185369..1186505(+) (degS) [[Bacillus] selenitireducens MLS10]
MSTTKSIETILDRMMEMVSSSKEEIFEIGEQSRTEYEELKKELSTIQQDVIHLIDEQDQAEIRSRFARNRLAEVSKHFAN
YTDQEVKEAYEQAKDYQVRLAVLQSEEKQLRERRTQVERRLMKLGETVERAEQLINQINAVLQYLNGDLQSVSDMIQDAE
QMQQFGVQIIHAQEEERKKLSREIHDGPAQMMANVMLRSELVEKVLDQEGPERARVEIRDLRRMVTESLSEVRRIIYDLR
PMTLDDLGLVPTVAKFIDNVNDYQEQTEVNFRNLGSKERIPAHMEVAMFRFIQEAVQNAVKHAKANTISVKMEIKKTSVV
AIVKDDGRGFDPVTKKENSFGLVGMKERVKLLDGDLTIDTKPGKGTLIMLQVPLPQDS

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=37477 BSEL_RS05265 WP_013171963.1 1185369..1186505(+) (degS) [[Bacillus] selenitireducens MLS10]
GTGTCCACAACAAAGTCCATTGAAACCATTCTCGATCGCATGATGGAGATGGTCTCATCAAGTAAAGAAGAAATTTTCGA
AATCGGGGAACAGTCCCGAACCGAATATGAGGAACTGAAGAAAGAACTGAGCACGATCCAGCAGGATGTCATCCACCTCA
TTGATGAGCAGGACCAGGCGGAAATCCGGTCCCGCTTTGCGAGGAACCGGCTTGCGGAGGTCAGTAAGCACTTCGCCAAC
TATACGGATCAGGAAGTGAAAGAGGCGTATGAACAGGCGAAAGATTACCAGGTGCGTCTTGCCGTGCTTCAATCCGAAGA
AAAGCAGCTCCGTGAACGGCGGACCCAGGTCGAGCGCCGGCTCATGAAGCTCGGGGAGACGGTGGAGCGGGCAGAACAGC
TGATCAATCAGATCAATGCGGTTTTGCAGTATTTGAACGGCGACTTACAAAGTGTGAGCGACATGATCCAAGACGCCGAA
CAGATGCAACAGTTTGGGGTTCAGATCATTCACGCTCAGGAAGAAGAGCGAAAGAAGCTCTCCCGTGAAATTCACGACGG
GCCAGCCCAGATGATGGCGAACGTGATGCTTCGCTCGGAGCTCGTGGAGAAAGTCCTCGATCAGGAAGGGCCGGAGCGGG
CGAGAGTGGAGATCAGGGATCTTCGCCGGATGGTGACCGAATCGCTCAGTGAAGTGCGCCGGATTATTTATGATCTGAGG
CCGATGACATTAGACGACCTCGGCCTCGTGCCGACGGTTGCCAAGTTTATCGATAATGTGAATGATTATCAGGAACAGAC
TGAGGTGAACTTCCGTAATCTCGGCTCCAAAGAACGGATCCCCGCGCATATGGAAGTGGCCATGTTCCGGTTTATTCAGG
AAGCGGTACAGAACGCGGTGAAGCATGCGAAGGCCAATACAATCAGTGTCAAGATGGAAATCAAGAAAACAAGTGTCGTG
GCGATCGTCAAAGATGATGGCAGAGGCTTCGATCCGGTTACGAAGAAGGAAAACAGCTTCGGCCTTGTGGGTATGAAGGA
GCGGGTCAAATTACTCGATGGGGATCTGACCATCGACACGAAGCCCGGGAAAGGGACGCTCATCATGCTTCAAGTCCCGC
TGCCGCAGGATTCGTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(176-244)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(288-375)

Sensor protein DegS (DegS)

(8-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6Y0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

51.459

99.735

0.513

Multiple sequence alignment