Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FOY61_RS25820 | Genome accession | NZ_CP041771 |
| Coordinates | 5365543..5366415 (+) | Length | 290 a.a. |
| NCBI ID | WP_017148550.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain A681 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5360543..5371415
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOY61_RS25800 (FOY61_25800) | tfpZ | 5361051..5361788 (-) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| FOY61_RS25805 (FOY61_25805) | pilE | 5361853..5362389 (-) | 537 | WP_143978162.1 | pilin | Machinery gene |
| FOY61_RS25810 (FOY61_25810) | pilB | 5362616..5364319 (+) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FOY61_RS25815 (FOY61_25815) | pilC | 5364323..5365540 (+) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| FOY61_RS25820 (FOY61_25820) | pilD | 5365543..5366415 (+) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| FOY61_RS25825 (FOY61_25825) | coaE | 5366412..5367023 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| FOY61_RS25830 (FOY61_25830) | yacG | 5367020..5367220 (+) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| FOY61_RS25835 (FOY61_25835) | - | 5367257..5367466 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| FOY61_RS25840 (FOY61_25840) | - | 5367572..5368261 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| FOY61_RS25845 (FOY61_25845) | - | 5368258..5368728 (-) | 471 | WP_023103507.1 | hypothetical protein | - |
| FOY61_RS25850 (FOY61_25850) | - | 5368725..5369150 (-) | 426 | WP_016562341.1 | GNAT family N-acetyltransferase | - |
| FOY61_RS25855 (FOY61_25855) | - | 5369283..5369912 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| FOY61_RS25860 (FOY61_25860) | - | 5369909..5370358 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| FOY61_RS25865 (FOY61_25865) | - | 5370384..5370554 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31888.88 Da Isoelectric Point: 7.7068
>NTDB_id=374089 FOY61_RS25820 WP_017148550.1 5365543..5366415(+) (pilD) [Pseudomonas aeruginosa strain A681]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=374089 FOY61_RS25820 WP_017148550.1 5365543..5366415(+) (pilD) [Pseudomonas aeruginosa strain A681]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
53.791 |
95.517 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.071 |
96.552 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
51.071 |
96.552 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.571 |
96.552 |
0.469 |