Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FNS63_RS06180 Genome accession   NZ_CP041770
Coordinates   1354892..1355227 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain DH8030     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349892..1360227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNS63_RS06160 (FNS63_06155) gcvT 1350503..1351603 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  FNS63_RS06165 (FNS63_06160) - 1352026..1353696 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  FNS63_RS06170 (FNS63_06165) - 1353714..1354508 (+) 795 WP_003153106.1 YqhG family protein -
  FNS63_RS06175 (FNS63_06170) sinI 1354685..1354858 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  FNS63_RS06180 (FNS63_06175) sinR 1354892..1355227 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  FNS63_RS06185 (FNS63_06180) tasA 1355275..1356060 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  FNS63_RS06190 (FNS63_06185) sipW 1356124..1356708 (-) 585 WP_003153100.1 signal peptidase I SipW -
  FNS63_RS06195 (FNS63_06190) tapA 1356680..1357351 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  FNS63_RS06200 (FNS63_06195) - 1357611..1357940 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  FNS63_RS06205 (FNS63_06200) - 1357980..1358159 (-) 180 WP_003153093.1 YqzE family protein -
  FNS63_RS06210 (FNS63_06205) comGG 1358216..1358593 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  FNS63_RS06215 (FNS63_06210) comGF 1358594..1359094 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  FNS63_RS06220 (FNS63_06215) comGE 1359003..1359317 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  FNS63_RS06225 (FNS63_06220) comGD 1359301..1359738 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  FNS63_RS06230 (FNS63_06225) comGC 1359728..1359994 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=374006 FNS63_RS06180 WP_003153104.1 1354892..1355227(+) (sinR) [Bacillus amyloliquefaciens strain DH8030]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=374006 FNS63_RS06180 WP_003153104.1 1354892..1355227(+) (sinR) [Bacillus amyloliquefaciens strain DH8030]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment