Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   G7B60_RS09010 Genome accession   NZ_CP049353
Coordinates   1868681..1869337 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain T28R     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863681..1874337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7B60_RS08980 (G7B60_08980) dcyD 1864561..1865547 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  G7B60_RS08985 (G7B60_08985) tcyL 1865562..1866230 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  G7B60_RS08990 (G7B60_08990) tcyN 1866227..1866979 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  G7B60_RS08995 (G7B60_08995) sdiA 1867209..1867931 (+) 723 WP_001154265.1 transcriptional regulator SdiA -
  G7B60_RS09000 (G7B60_09000) yecF 1867998..1868222 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  G7B60_RS09005 (G7B60_09005) yecU 1868209..1868385 (-) 177 WP_001307856.1 protein YecU -
  G7B60_RS25140 - 1868468..1868539 (-) 72 Protein_1775 transcriptional regulator -
  G7B60_RS09010 (G7B60_09010) letA 1868681..1869337 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  G7B60_RS09015 (G7B60_09015) uvrC 1869334..1871166 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  G7B60_RS09020 (G7B60_09020) pgsA 1871223..1871771 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G7B60_RS09040 (G7B60_09040) - 1872467..1873207 (-) 741 Protein_1779 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=373844 G7B60_RS09010 WP_000611335.1 1868681..1869337(+) (letA) [Escherichia coli strain T28R]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=373844 G7B60_RS09010 WP_000611335.1 1868681..1869337(+) (letA) [Escherichia coli strain T28R]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATTATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486