Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FFH21_RS24295 | Genome accession | NZ_CP041754 |
| Coordinates | 5094310..5094873 (-) | Length | 187 a.a. |
| NCBI ID | WP_002555458.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. KBS0707 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5082011..5120504 | 5094310..5094873 | within | 0 |
Gene organization within MGE regions
Location: 5082011..5120504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FFH21_RS24245 (FFH21_024245) | - | 5082011..5084920 (-) | 2910 | WP_011169594.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| FFH21_RS24250 (FFH21_024250) | - | 5084952..5085773 (-) | 822 | WP_011169595.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| FFH21_RS24255 (FFH21_024255) | - | 5086066..5087196 (-) | 1131 | WP_011169597.1 | ROK family transcriptional regulator | - |
| FFH21_RS24260 (FFH21_024260) | - | 5087362..5088678 (+) | 1317 | WP_011169598.1 | extracellular solute-binding protein | - |
| FFH21_RS24265 (FFH21_024265) | - | 5088675..5089568 (+) | 894 | WP_004655894.1 | carbohydrate ABC transporter permease | - |
| FFH21_RS24270 (FFH21_024270) | - | 5089565..5090458 (+) | 894 | WP_011169599.1 | ABC transporter permease subunit | - |
| FFH21_RS24275 (FFH21_024275) | - | 5090455..5091561 (+) | 1107 | WP_004666344.1 | ABC transporter ATP-binding protein | - |
| FFH21_RS24280 (FFH21_024280) | - | 5091568..5092329 (+) | 762 | WP_002555451.1 | glycerophosphoryl diester phosphodiesterase | - |
| FFH21_RS24285 (FFH21_024285) | - | 5092326..5093069 (+) | 744 | WP_004666346.1 | inositol monophosphatase family protein | - |
| FFH21_RS24290 (FFH21_024290) | - | 5093069..5094181 (+) | 1113 | WP_011169600.1 | endo-1,4-beta-xylanase | - |
| FFH21_RS24295 (FFH21_024295) | ssb | 5094310..5094873 (-) | 564 | WP_002555458.1 | single-stranded DNA-binding protein | Machinery gene |
| FFH21_RS24300 (FFH21_024300) | - | 5095149..5095955 (+) | 807 | WP_011169601.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| FFH21_RS24305 (FFH21_024305) | - | 5095957..5098083 (+) | 2127 | WP_054072919.1 | hypothetical protein | - |
| FFH21_RS24310 (FFH21_024310) | - | 5098061..5098798 (+) | 738 | WP_159420246.1 | ATP-binding protein | - |
| FFH21_RS24315 (FFH21_024315) | - | 5098840..5099454 (+) | 615 | WP_041924647.1 | hypothetical protein | - |
| FFH21_RS24320 (FFH21_024320) | - | 5099451..5100485 (+) | 1035 | WP_011169603.1 | TniQ family protein | - |
| FFH21_RS24325 (FFH21_024325) | - | 5100410..5101381 (+) | 972 | WP_011169604.1 | hypothetical protein | - |
| FFH21_RS24330 (FFH21_024330) | - | 5101394..5101633 (-) | 240 | WP_041924648.1 | hypothetical protein | - |
| FFH21_RS24335 (FFH21_024335) | - | 5102133..5102837 (-) | 705 | WP_041924649.1 | alpha/beta fold hydrolase | - |
| FFH21_RS24340 (FFH21_024340) | - | 5102879..5104522 (-) | 1644 | WP_041924650.1 | hypothetical protein | - |
| FFH21_RS24345 (FFH21_024345) | - | 5104582..5106126 (-) | 1545 | WP_116818329.1 | amino acid adenylation domain-containing protein | - |
| FFH21_RS24350 (FFH21_024350) | - | 5106128..5108422 (-) | 2295 | WP_011169609.1 | polyketide synthase | - |
| FFH21_RS24355 (FFH21_024355) | - | 5108422..5109576 (-) | 1155 | WP_041924651.1 | acyl-CoA dehydrogenase family protein | - |
| FFH21_RS24360 (FFH21_024360) | - | 5109549..5109836 (-) | 288 | WP_054073196.1 | phosphopantetheine-binding protein | - |
| FFH21_RS24365 (FFH21_024365) | - | 5109857..5110900 (-) | 1044 | WP_011169611.1 | hypothetical protein | - |
| FFH21_RS24370 (FFH21_024370) | - | 5111274..5112806 (+) | 1533 | WP_011169612.1 | amino acid adenylation domain-containing protein | - |
| FFH21_RS24375 (FFH21_024375) | - | 5112803..5113768 (+) | 966 | WP_011169613.1 | 3-oxoacyl-ACP synthase | - |
| FFH21_RS24380 (FFH21_024380) | - | 5113770..5113994 (+) | 225 | WP_011169614.1 | acyl carrier protein | - |
| FFH21_RS24385 (FFH21_024385) | - | 5114050..5114643 (+) | 594 | WP_041924652.1 | hypothetical protein | - |
| FFH21_RS24390 (FFH21_024390) | - | 5114716..5115912 (+) | 1197 | WP_011169615.1 | sugar efflux transporter | - |
| FFH21_RS24395 (FFH21_024395) | - | 5115981..5117138 (+) | 1158 | WP_011169616.1 | KamA family radical SAM protein | - |
| FFH21_RS24400 (FFH21_024400) | - | 5117166..5118533 (+) | 1368 | WP_011169617.1 | acetyl-CoA carboxylase biotin carboxylase subunit family protein | - |
| FFH21_RS24405 (FFH21_024405) | - | 5118538..5119263 (+) | 726 | WP_011169618.1 | 2OG-Fe dioxygenase family protein | - |
| FFH21_RS24410 (FFH21_024410) | - | 5119263..5120504 (+) | 1242 | WP_011169619.1 | MFS transporter | - |
Sequence
Protein
Download Length: 187 a.a. Molecular weight: 20804.92 Da Isoelectric Point: 5.9404
>NTDB_id=373770 FFH21_RS24295 WP_002555458.1 5094310..5094873(-) (ssb) [Pseudomonas sp. KBS0707]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 564 bp
>NTDB_id=373770 FFH21_RS24295 WP_002555458.1 5094310..5094873(-) (ssb) [Pseudomonas sp. KBS0707]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTTGCCGAAATCGCTGGCGAATACCTGCGTAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGCCCACAAGGCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAAAACTACAACCAGCAGCCGCCACAA
CGCGACTCGCGCCCGGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTT
CTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTTGCCGAAATCGCTGGCGAATACCTGCGTAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGCCCACAAGGCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAAAACTACAACCAGCAGCCGCCACAA
CGCGACTCGCGCCCGGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTT
CTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.974 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
47.09 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
45.161 |
99.465 |
0.449 |
| ssb | Neisseria gonorrhoeae MS11 |
45.161 |
99.465 |
0.449 |