Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FFH21_RS03705 Genome accession   NZ_CP041754
Coordinates   777859..779451 (-) Length   530 a.a.
NCBI ID   WP_011167665.1    Uniprot ID   Q48NJ0
Organism   Pseudomonas sp. KBS0707     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 772859..784451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFH21_RS03685 (FFH21_003685) - 774380..775489 (-) 1110 WP_041924424.1 efflux RND transporter periplasmic adaptor subunit -
  FFH21_RS03690 (FFH21_003690) - 775571..776188 (-) 618 WP_041924425.1 TetR/AcrR family transcriptional regulator -
  FFH21_RS03700 (FFH21_003700) pilR 776519..777856 (-) 1338 WP_011167664.1 sigma-54 dependent transcriptional regulator Regulator
  FFH21_RS03705 (FFH21_003705) pilS 777859..779451 (-) 1593 WP_011167665.1 nitrogen regulation protein NR(II) Regulator
  FFH21_RS03710 (FFH21_003710) - 779441..779680 (-) 240 WP_002551997.1 PP0621 family protein -
  FFH21_RS03715 (FFH21_003715) - 779810..780832 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  FFH21_RS03720 (FFH21_003720) rluD 780982..781944 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FFH21_RS03725 (FFH21_003725) pgeF 781941..782669 (+) 729 WP_011167666.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58146.96 Da        Isoelectric Point: 7.0058

>NTDB_id=373753 FFH21_RS03705 WP_011167665.1 777859..779451(-) (pilS) [Pseudomonas sp. KBS0707]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYVSFGTPSVSNDYVQAGSLG
ALCFAAAMLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSTAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=373753 FFH21_RS03705 WP_011167665.1 777859..779451(-) (pilS) [Pseudomonas sp. KBS0707]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGACTTTACCACCTTTATCGACTGACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATGTCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCTGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCAATGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATTCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGAGCCCTGACCCTGCTCGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCACAGTTGGTGGAACGCCTGCGTCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAAATTGCTCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTACTCAACGAGTCGGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGATCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAATTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCACTGAATTTCGCAGTTCCACTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCCGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCGATTCTGGAAGTACAGGACGACGGGCCGGGGGTCAGCGAGCAACATTTGGCCAAGCTATTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTGTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48NJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615

Multiple sequence alignment