Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FFH90_RS26455 Genome accession   NZ_CP041753
Coordinates   5748874..5750463 (+) Length   529 a.a.
NCBI ID   WP_064620435.1    Uniprot ID   -
Organism   Pseudomonas sp. ATCC 43928     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5743874..5755463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFH90_RS26435 (FFH90_026435) pgeF 5745665..5746387 (-) 723 WP_064620427.1 peptidoglycan editing factor PgeF -
  FFH90_RS26440 (FFH90_026440) rluD 5746384..5747346 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FFH90_RS26445 (FFH90_026445) - 5747498..5748514 (+) 1017 WP_086945903.1 outer membrane protein assembly factor BamD -
  FFH90_RS26450 (FFH90_026450) - 5748651..5748884 (+) 234 WP_007938406.1 PP0621 family protein -
  FFH90_RS26455 (FFH90_026455) pilS 5748874..5750463 (+) 1590 WP_064620435.1 PAS domain-containing sensor histidine kinase Regulator
  FFH90_RS26460 (FFH90_026460) pilR 5750460..5751806 (+) 1347 WP_019650972.1 sigma-54 dependent transcriptional regulator Regulator
  FFH90_RS26465 (FFH90_026465) thiO 5751826..5752926 (-) 1101 WP_138866325.1 glycine oxidase ThiO -
  FFH90_RS26470 (FFH90_026470) - 5752983..5753384 (-) 402 WP_019581258.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58645.59 Da        Isoelectric Point: 7.1685

>NTDB_id=373738 FFH90_RS26455 WP_064620435.1 5748874..5750463(+) (pilS) [Pseudomonas sp. ATCC 43928]
MIAETPSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPAQLF
GLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRVGLLIAAVGALGIVGLSFILSFNHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDNQRRVQLANHSALTLLGQEKLDGQLID
DYSIPLVERLQLWLNNPTLRPQSLQIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDQSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGSKEH
QQIHLRIGLGDFKTLMDPDQLTQILDNLLRNAWRHSALKHDRAQAWLELFIDPDSQLPTLEVLDDGPGVAPDQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=373738 FFH90_RS26455 WP_064620435.1 5748874..5750463(+) (pilS) [Pseudomonas sp. ATCC 43928]
GTGATCGCTGAGACGCCCAGCCCAGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGACGCCCCGCGCAGCTGTTC
GGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCGGGCGGCATGGCCAGTGCCATCGGCAATTT
GCTGATCGTCTCAGTAGCCATCAGCAATACCTTGCTGCGCGGGCGTGTCGGTCTGCTGATCGCAGCGGTCGGTGCCCTTG
GCATCGTGGGTTTGAGCTTCATCCTGAGCTTCAACCACCCCGCCAGCCCCAGTGATTACCTGCAAATCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCGCTGCTGGTGCAGGGATTGACCCGACGATTGGAGGTCAGCGAAACCCTGGCCGAACAGCG
GGCCAGTGAAGTGCTCGGTCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTCTGGTGCTCGACA
ACCAGCGGCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTGGACGGCCAGTTGATCGAC
GATTACTCGATACCGTTGGTCGAGCGGCTCCAACTGTGGCTCAACAATCCAACGTTGCGCCCGCAAAGCCTGCAGATCGC
CAGCAACGGCCTCGAGCTGCAACCAAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGGGATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGTGCGGACCGGCG
TCTGACCCAGATTATTCAAGACCAATCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAATTGTCCCGTCGCCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAGGCTCGAAAGAACAT
CAGCAGATTCACCTGCGCATCGGCTTGGGAGACTTCAAAACCCTGATGGATCCGGATCAGCTGACCCAGATTCTCGATAA
CCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTCAAGCATGATCGGGCGCAGGCCTGGCTTGAGTTGTTTATCGACCCGG
ACAGCCAGTTGCCGACCCTGGAAGTCCTGGACGATGGCCCTGGCGTTGCACCGGACCAACGTACTCACTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603

Multiple sequence alignment