Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | FFH90_RS26460 | Genome accession | NZ_CP041753 |
| Coordinates | 5750460..5751806 (+) | Length | 448 a.a. |
| NCBI ID | WP_019650972.1 | Uniprot ID | A0A2W7JFD7 |
| Organism | Pseudomonas sp. ATCC 43928 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5745460..5756806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FFH90_RS26435 (FFH90_026435) | pgeF | 5745665..5746387 (-) | 723 | WP_064620427.1 | peptidoglycan editing factor PgeF | - |
| FFH90_RS26440 (FFH90_026440) | rluD | 5746384..5747346 (-) | 963 | WP_007901932.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| FFH90_RS26445 (FFH90_026445) | - | 5747498..5748514 (+) | 1017 | WP_086945903.1 | outer membrane protein assembly factor BamD | - |
| FFH90_RS26450 (FFH90_026450) | - | 5748651..5748884 (+) | 234 | WP_007938406.1 | PP0621 family protein | - |
| FFH90_RS26455 (FFH90_026455) | pilS | 5748874..5750463 (+) | 1590 | WP_064620435.1 | PAS domain-containing sensor histidine kinase | Regulator |
| FFH90_RS26460 (FFH90_026460) | pilR | 5750460..5751806 (+) | 1347 | WP_019650972.1 | sigma-54 dependent transcriptional regulator | Regulator |
| FFH90_RS26465 (FFH90_026465) | thiO | 5751826..5752926 (-) | 1101 | WP_138866325.1 | glycine oxidase ThiO | - |
| FFH90_RS26470 (FFH90_026470) | - | 5752983..5753384 (-) | 402 | WP_019581258.1 | type IV pilin protein | - |
| FFH90_RS26475 (FFH90_026475) | - | 5753398..5756520 (-) | 3123 | WP_138866326.1 | pilus assembly protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 49874.28 Da Isoelectric Point: 7.0909
>NTDB_id=373739 FFH90_RS26460 WP_019650972.1 5750460..5751806(+) (pilR) [Pseudomonas sp. ATCC 43928]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLA
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLA
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=373739 FFH90_RS26460 WP_019650972.1 5750460..5751806(+) (pilR) [Pseudomonas sp. ATCC 43928]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGCAGAAGCGCAGGCGCTACTGGCTCGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCACAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACAGCAATAAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGTCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGGCTGCTGGGAGACTCGCTGCCAATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAAGCC
CCGGTCTACATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCTCGACTTATCCACGACCAAGGCCCGCGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCTGGGCTGTTCCAGGCAGCCCATGGCGGTACGTTGTTCCTCGACGAAGTGGCT
GACCTGCCGCTGGCAATGCAGGTCAAACTGCTGCGGGCCATACAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCACAAAGACCTCGATGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACTTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAGCCCCCCGCAAAACTCCACCCACAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCAGAAGGCAACTGCAACCCGGACGGCGGCGTGCCAGACCTGACACAGATCGATAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCATTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGCAGAAGCGCAGGCGCTACTGGCTCGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCACAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACAGCAATAAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGTCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGGCTGCTGGGAGACTCGCTGCCAATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAAGCC
CCGGTCTACATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCTCGACTTATCCACGACCAAGGCCCGCGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCTGGGCTGTTCCAGGCAGCCCATGGCGGTACGTTGTTCCTCGACGAAGTGGCT
GACCTGCCGCTGGCAATGCAGGTCAAACTGCTGCGGGCCATACAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCACAAAGACCTCGATGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACTTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAGCCCCCCGCAAAACTCCACCCACAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCAGAAGGCAACTGCAACCCGGACGGCGGCGTGCCAGACCTGACACAGATCGATAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCATTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.233 |
98.884 |
0.783 |
| pilR | Acinetobacter baumannii strain A118 |
49.02 |
100 |
0.502 |