Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FOA15_RS01785 Genome accession   NZ_CP041731
Coordinates   358964..359917 (-) Length   317 a.a.
NCBI ID   WP_179030693.1    Uniprot ID   -
Organism   Paenibacillus kribbensis strain PS04     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353964..364917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS01755 - 353982..354308 (-) 327 WP_007432209.1 thioredoxin family protein -
  FOA15_RS01760 - 354440..355351 (-) 912 WP_179030690.1 aldo/keto reductase -
  FOA15_RS01765 - 355498..356241 (-) 744 WP_179030691.1 alpha/beta hydrolase -
  FOA15_RS01770 - 356274..357260 (-) 987 WP_094153797.1 siderophore ABC transporter substrate-binding protein -
  FOA15_RS01775 - 357273..358031 (-) 759 WP_179030692.1 ABC transporter ATP-binding protein -
  FOA15_RS01780 - 358025..358974 (-) 950 Protein_345 iron chelate uptake ABC transporter family permease subunit -
  FOA15_RS01785 ceuB 358964..359917 (-) 954 WP_179030693.1 ABC transporter permease Machinery gene
  FOA15_RS01790 - 360185..360862 (+) 678 WP_179030694.1 response regulator transcription factor -
  FOA15_RS01795 - 360864..361781 (+) 918 WP_179030695.1 sensor histidine kinase KdpD -
  FOA15_RS01800 - 361888..362565 (+) 678 WP_179030696.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34871.92 Da        Isoelectric Point: 9.9127

>NTDB_id=373608 FOA15_RS01785 WP_179030693.1 358964..359917(-) (ceuB) [Paenibacillus kribbensis strain PS04]
MKLRYLILVFLVLAFASVFIGVHDVTPFDLFRLTDDQAQVLLISRLPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLIAIMVFGAAGFWTKMLAAFSFALAGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QSISSWMQGDFSLIMSGRYEMLYLSVPLVVLAYIYANRFTIAGMGEDFAANLGVHYRRTVNMGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDHLKKSLAHTATLGAVFVLLCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=373608 FOA15_RS01785 WP_179030693.1 358964..359917(-) (ceuB) [Paenibacillus kribbensis strain PS04]
ATGAAATTGCGTTATTTAATACTGGTATTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
GTTCGATTTGTTCCGCTTAACCGATGATCAGGCGCAGGTGCTCCTGATTAGCAGACTTCCACGGTTGATTAGCATTATTA
TCGCAGGAGCGAGTATGAGTATCTGCGGGCTGATCATGCAGCAGCTTACCCGGAATCGGTTTGTATCGCCTACTACCGCA
GGGACGATGGATGCGGCACGCTTGGGTGTCTTGATTGCGATCATGGTGTTTGGAGCGGCTGGATTTTGGACGAAAATGCT
GGCAGCCTTCAGTTTTGCTCTTGCCGGGACACTTGTTTTTATGAAAATACTGGATAAGATTCGTTTCAAGGACCCGGTAT
TTATCCCGCTGGTTGGTTTGATGTTCGGAGGCATTTTGAATTCAGTGACGACCTTCTTTGCTTATAAATACAATCTGATC
CAGAGCATTTCCTCGTGGATGCAGGGGGATTTTTCTCTGATTATGAGCGGTCGCTACGAAATGCTGTACCTTAGTGTTCC
TTTGGTTGTGTTGGCGTACATCTATGCGAATCGTTTCACAATTGCAGGTATGGGCGAGGATTTTGCGGCAAATTTGGGCG
TACATTACAGGCGCACCGTCAATATGGGTCTGGTGATTGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACCGTGGGGACA
ATTCCCTTTCTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTACATGGGGGATCATCTGAAAAAAAGCCTGGCTCATAC
AGCGACTCTTGGCGCCGTTTTTGTGCTGCTTTGCGATATTTTGGGACGGGTCATCATTTATCCGTATGAAATCTCTGTGG
GGCTTACCGTGGGTGTGATCGGGAGCGCGCTGTTCTTGTATTTGCTGTTGAGGAGAAGGGCCTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505

Multiple sequence alignment