Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FNU76_RS08545 Genome accession   NZ_CP041730
Coordinates   1892140..1893600 (+) Length   486 a.a.
NCBI ID   WP_144277802.1    Uniprot ID   A0A516SEG8
Organism   Chitinimonas arctica strain R3-44     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1887140..1898600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNU76_RS08520 (FNU76_08520) - 1888797..1889774 (+) 978 WP_373279716.1 SIS domain-containing protein -
  FNU76_RS08525 (FNU76_08525) kdsC 1889746..1890315 (+) 570 WP_144277798.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FNU76_RS08530 (FNU76_08530) lptC 1890318..1890893 (+) 576 WP_144277799.1 LPS export ABC transporter periplasmic protein LptC -
  FNU76_RS08535 (FNU76_08535) lptA 1890874..1891410 (+) 537 WP_144277800.1 lipopolysaccharide transport periplasmic protein LptA -
  FNU76_RS08540 (FNU76_08540) lptB 1891407..1892132 (+) 726 WP_144277801.1 LPS export ABC transporter ATP-binding protein -
  FNU76_RS08545 (FNU76_08545) rpoN/rpoN1 1892140..1893600 (+) 1461 WP_144277802.1 RNA polymerase factor sigma-54 Machinery gene
  FNU76_RS08550 (FNU76_08550) hpf 1893643..1894005 (+) 363 WP_144277803.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FNU76_RS08555 (FNU76_08555) - 1894139..1894594 (+) 456 WP_144277804.1 PTS sugar transporter subunit IIA -
  FNU76_RS08560 (FNU76_08560) hprK 1894741..1895682 (+) 942 WP_144277805.1 HPr(Ser) kinase/phosphatase -
  FNU76_RS08565 (FNU76_08565) rapZ 1895685..1896539 (+) 855 WP_144277806.1 RNase adapter RapZ -
  FNU76_RS08570 (FNU76_08570) - 1896536..1897162 (+) 627 WP_144277807.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 54403.88 Da        Isoelectric Point: 4.5350

>NTDB_id=373597 FNU76_RS08545 WP_144277802.1 1892140..1893600(+) (rpoN/rpoN1) [Chitinimonas arctica strain R3-44]
MKQSLQLKFSQSLTLTPQLQQSIKLLQLSTLDLNQEIERFLLENPMLEREDENEPEIHVVREDGTPVEVEAPTPTLDEAP
AQESGESDFDMDDSLGDNYWSEAGGGQTRDDDDEFDPQANVARISTLREHLLAQLGLLPISPRDLALASMVIDALDDNGY
LGLSLEEIYELIPQEVRDGLEIEREELQIGLQLVRQLEPCGIGAVDLKGCLLLQLQQQMGDEPASGLARAIVAEHLDLLA
NKDYSKLKKTLKCDDDALKAAQILIQRLNPRPGAMFGETETRYVVADVIVKKLRQGWSVQLNEAAMPKLKVNQLYANILR
QHRDSGAGLSGQLQEAKWLIKNVQQRFDTILRVAQAIVEKQQRFFEHGDVAMRPLVLRDIAEELDLHESTISRVTTQKYM
LTPSGIFEFKYFFGSHVDTDSGGECSAIAIKALIKQLIQGEDTKKPLSDSYLADVLGKQGITVARRTVAKYREALQIPPV
NQRKSL

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=373597 FNU76_RS08545 WP_144277802.1 1892140..1893600(+) (rpoN/rpoN1) [Chitinimonas arctica strain R3-44]
ATGAAACAGTCCCTCCAACTCAAATTCTCGCAGTCGCTCACGCTCACGCCGCAGTTGCAACAGTCGATCAAACTGCTGCA
ATTGTCCACGCTCGACCTGAACCAGGAAATCGAGCGCTTCCTGCTGGAAAACCCCATGCTGGAGCGCGAGGACGAGAACG
AGCCGGAAATCCACGTGGTCCGGGAAGACGGCACGCCGGTGGAGGTCGAGGCACCCACGCCCACCCTGGATGAAGCACCC
GCGCAGGAATCGGGCGAGTCCGATTTCGATATGGACGACTCGCTGGGCGACAATTACTGGAGCGAGGCTGGTGGGGGCCA
AACCCGCGACGACGACGACGAGTTCGACCCGCAAGCCAATGTCGCCCGTATCTCCACCCTGCGCGAACACTTGCTGGCGC
AGCTGGGCCTGCTGCCCATCAGTCCGCGCGATCTGGCGCTGGCCAGCATGGTGATCGATGCACTGGACGACAATGGTTAC
TTGGGGCTAAGCCTGGAGGAAATCTACGAACTGATCCCCCAGGAAGTGCGCGACGGGCTGGAAATCGAGCGGGAAGAACT
GCAGATCGGCCTGCAGCTGGTACGCCAGTTGGAACCTTGCGGCATCGGGGCGGTCGATCTCAAAGGCTGCCTGCTTTTGC
AATTGCAGCAGCAGATGGGCGATGAACCGGCTAGCGGATTGGCCCGGGCAATCGTCGCCGAGCACCTCGATTTATTGGCC
AACAAGGACTACAGTAAGCTTAAGAAAACGCTCAAATGCGATGACGATGCGCTGAAAGCGGCCCAAATACTGATCCAGCG
GCTCAATCCACGCCCTGGCGCCATGTTTGGCGAGACCGAAACGCGTTATGTGGTAGCGGACGTTATCGTGAAGAAGCTTC
GGCAGGGCTGGTCGGTTCAGCTCAACGAAGCGGCAATGCCCAAGCTTAAAGTTAACCAGCTTTACGCCAACATCCTGCGG
CAGCACCGCGACAGCGGCGCCGGCCTGTCAGGTCAGCTGCAGGAAGCCAAATGGCTTATCAAGAACGTCCAGCAACGCTT
CGATACCATCCTCCGGGTTGCGCAGGCCATAGTCGAGAAGCAACAACGATTCTTCGAGCACGGCGACGTGGCCATGCGGC
CGCTGGTACTGCGCGATATCGCCGAGGAGTTGGATCTGCACGAATCGACCATCTCACGCGTGACCACCCAGAAGTACATG
CTCACACCCAGTGGCATCTTCGAATTCAAGTACTTCTTCGGCAGCCATGTCGATACCGACTCGGGTGGCGAATGCTCGGC
CATCGCGATCAAGGCGTTAATCAAGCAGCTCATCCAAGGCGAAGATACGAAAAAACCGCTTAGCGACAGCTATCTCGCCG
ACGTGCTGGGCAAGCAAGGCATCACCGTCGCGCGCCGTACCGTCGCCAAGTACCGAGAAGCATTACAAATCCCTCCCGTG
AACCAACGAAAGTCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(119-315)

Sigma-54, DNA binding domain (Sigma54_DBD)

(331-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516SEG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.663

100

0.558

Multiple sequence alignment