Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   G6536_RS10200 Genome accession   NZ_CP049330
Coordinates   1988911..1989339 (+) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   Q65J43
Organism   Bacillus licheniformis strain CP6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1983911..1994339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS10170 (G6536_10310) - 1984094..1984702 (+) 609 WP_009328237.1 flavin reductase family protein -
  G6536_RS10175 (G6536_10315) wrbA 1984903..1985514 (+) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  G6536_RS10180 (G6536_10320) - 1985835..1985975 (+) 141 WP_003182211.1 hypothetical protein -
  G6536_RS10185 (G6536_10325) - 1985968..1986801 (+) 834 WP_003182213.1 prohibitin family protein -
  G6536_RS10190 (G6536_10330) - 1986892..1987653 (+) 762 WP_003182215.1 hypothetical protein -
  G6536_RS10195 (G6536_10335) - 1987713..1988552 (+) 840 WP_003182218.1 thymidylate synthase -
  G6536_RS10200 (G6536_10340) nucA/comI 1988911..1989339 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  G6536_RS10205 (G6536_10345) dinR/lexA 1989535..1990158 (-) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  G6536_RS10210 (G6536_10350) yneA 1990311..1990622 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  G6536_RS10215 (G6536_10355) - 1990641..1991288 (+) 648 WP_003182227.1 recombinase family protein -
  G6536_RS10220 (G6536_10360) - 1991354..1991587 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  G6536_RS10225 (G6536_10365) recP/tkt 1991754..1993757 (+) 2004 WP_009328229.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=373569 G6536_RS10200 WP_003182220.1 1988911..1989339(+) (nucA/comI) [Bacillus licheniformis strain CP6]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=373569 G6536_RS10200 WP_003182220.1 1988911..1989339(+) (nucA/comI) [Bacillus licheniformis strain CP6]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCACGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGCGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6EJS
  PDB 6EJT
  PDB 6EJU
  PDB 6EJV
  PDB 9FJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521

Multiple sequence alignment