Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   MFABIIPG_RS16530 Genome accession   NZ_CP049240
Coordinates   3511725..3512360 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain Ax270     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3506725..3517360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFABIIPG_RS16510 (MFABIIPG_03289) - 3506801..3507616 (+) 816 WP_000011168.1 DsbC family protein -
  MFABIIPG_RS16515 (MFABIIPG_03290) - 3507861..3509162 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  MFABIIPG_RS16520 (MFABIIPG_03291) thrC 3509218..3510357 (+) 1140 WP_000063593.1 threonine synthase -
  MFABIIPG_RS16525 (MFABIIPG_03292) pbpG 3510466..3511512 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MFABIIPG_RS16530 (MFABIIPG_03293) letA 3511725..3512360 (+) 636 WP_000633799.1 response regulator Regulator
  MFABIIPG_RS16535 (MFABIIPG_03294) pilS 3512371..3513939 (+) 1569 WP_001160337.1 sensor histidine kinase Regulator
  MFABIIPG_RS16540 (MFABIIPG_03295) - 3513964..3515385 (+) 1422 WP_000840548.1 sigma-54-dependent transcriptional regulator -
  MFABIIPG_RS16545 (MFABIIPG_03296) - 3515389..3516573 (-) 1185 WP_000939109.1 S41 family peptidase -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=373411 MFABIIPG_RS16530 WP_000633799.1 3511725..3512360(+) (letA) [Acinetobacter baumannii strain Ax270]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=373411 MFABIIPG_RS16530 WP_000633799.1 3511725..3512360(+) (letA) [Acinetobacter baumannii strain Ax270]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55

  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55


Multiple sequence alignment