Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   FO454_RS03545 Genome accession   NZ_CP041722
Coordinates   785141..786769 (+) Length   542 a.a.
NCBI ID   WP_070866299.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SL13     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 780141..791769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO454_RS03525 (FO454_03525) ssb 781187..781477 (+) 291 WP_070817190.1 cassette chromosome ssDNA-binding protein -
  FO454_RS03530 (FO454_03530) cch1 781477..783267 (+) 1791 WP_070817191.1 cassette chromosome replicative helicase -
  FO454_RS03535 (FO454_03535) - 783335..783592 (+) 258 WP_070817192.1 hypothetical protein -
  FO454_RS03540 (FO454_03540) ccrA 783770..785119 (+) 1350 WP_150891421.1 cassette chromosome recombinase CcrA Machinery gene
  FO454_RS03545 (FO454_03545) ccrB 785141..786769 (+) 1629 WP_070866299.1 cassette chromosome recombinase CcrB Machinery gene
  FO454_RS03550 (FO454_03550) - 787244..787582 (+) 339 WP_070817195.1 SAUGI family uracil-DNA glycosylase inhibitor -
  FO454_RS03555 (FO454_03555) - 787678..787989 (+) 312 WP_070817196.1 DUF960 family protein -
  FO454_RS03560 (FO454_03560) - 788005..788514 (+) 510 WP_070817197.1 DUF1643 domain-containing protein -
  FO454_RS13235 - 788661..788891 (+) 231 WP_225307317.1 hypothetical protein -
  FO454_RS03570 (FO454_03570) - 789190..790401 (-) 1212 WP_070817198.1 hypothetical protein -
  FO454_RS03575 (FO454_03575) - 790532..791530 (+) 999 WP_070817199.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62719.62 Da        Isoelectric Point: 9.5288

>NTDB_id=373375 FO454_RS03545 WP_070866299.1 785141..786769(+) (ccrB) [Staphylococcus lugdunensis strain SL13]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIKEYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYEKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKDNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=373375 FO454_RS03545 WP_070866299.1 785141..786769(+) (ccrB) [Staphylococcus lugdunensis strain SL13]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAGATTAAAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAACCGGCTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAACACTTCTTCGGGTAAACTGATGTTACAAATACTTGCGAGCTTCTCTG
AATTCGAACGCAATAACATTGTCGAAAATGTATTCATGGGACAAACCAGACGTGCACAAGAAGGCTATTATCAAGGCAAT
ATTCCACTTGGCTATGAGAAAATTCCAGACAATAAACATGAACTCATGATAAACCAACATGAAGCCAATATTGTGAAGTA
TATCTTTGAATCATACGCTAAAGGGCATGGCTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGATAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTTATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATTAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAACAAATCGCTGCTTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.531

100

0.865

Multiple sequence alignment