Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   FO454_RS03540 Genome accession   NZ_CP041722
Coordinates   783770..785119 (+) Length   449 a.a.
NCBI ID   WP_150891421.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SL13     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 778770..790119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO454_RS03520 (FO454_03520) - 779972..781045 (-) 1074 WP_070817189.1 hypothetical protein -
  FO454_RS03525 (FO454_03525) ssb 781187..781477 (+) 291 WP_070817190.1 cassette chromosome ssDNA-binding protein -
  FO454_RS03530 (FO454_03530) cch1 781477..783267 (+) 1791 WP_070817191.1 cassette chromosome replicative helicase -
  FO454_RS03535 (FO454_03535) - 783335..783592 (+) 258 WP_070817192.1 hypothetical protein -
  FO454_RS03540 (FO454_03540) ccrA 783770..785119 (+) 1350 WP_150891421.1 cassette chromosome recombinase CcrA Machinery gene
  FO454_RS03545 (FO454_03545) ccrB 785141..786769 (+) 1629 WP_070866299.1 cassette chromosome recombinase CcrB Machinery gene
  FO454_RS03550 (FO454_03550) - 787244..787582 (+) 339 WP_070817195.1 SAUGI family uracil-DNA glycosylase inhibitor -
  FO454_RS03555 (FO454_03555) - 787678..787989 (+) 312 WP_070817196.1 DUF960 family protein -
  FO454_RS03560 (FO454_03560) - 788005..788514 (+) 510 WP_070817197.1 DUF1643 domain-containing protein -
  FO454_RS13235 - 788661..788891 (+) 231 WP_225307317.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52307.99 Da        Isoelectric Point: 9.9049

>NTDB_id=373374 FO454_RS03540 WP_150891421.1 783770..785119(+) (ccrA) [Staphylococcus lugdunensis strain SL13]
MKQAIGYLRQSTTMQQSLAAQKQTIKALAEKHNIPHITFYNDKQSGRTDKRNGYQQITELIQQEQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYIYR
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLEKDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQEIRSQKHTKRTPSDNQLQKKIKCPYCNSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCAFKGINAQVLETSVLET
CQDFFQNQQLYSKINHTIQQRLKRQRDIEAKHILTQEQLIDKLAKGMIDAETFRNQSQSVLQNRKTISSISDTQLQTSLQ
KVIQKSFTLNMLYPYIDVIHITKNKELSGIYIKNEPLNIVNQTIQSSTG

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=373374 FO454_RS03540 WP_150891421.1 783770..785119(+) (ccrA) [Staphylococcus lugdunensis strain SL13]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAATGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCCACATATTACTTTTTATAACGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGAACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTTAAAAATGGTCTTAAAGAAAAAGCTAGACAAGGCAAACTCATCACGACACATGCACCATTTGGTTATATCTATCGC
AATGGTACATTCACAATTAATCAAGATGAAGCTCCAACGGTAAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAAAAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGAAATACGGTCACAAAAACATACAAAACGGACTCCATCAGATAATCAACTTCAGAAGAAAATCAA
ATGTCCATATTGTAATTCAACACTGACTAATATGACGATTAGAAAAAAGCACCATACGTTACGTTATTATGTCTGTCCTC
AAAATATGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGAGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAGACAAAGGGA
CATAGAAGCTAAACATATACTCACGCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTTA
GGAATCAGTCTCAATCAGTGCTTCAAAATCGCAAAACCATATCCTCAATAAGTGATACTCAGTTACAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGTTGTATCCCTATATTGATGTCATTCATATTACTAAAAATAAAGAACT
AAGCGGAATCTATATAAAAAATGAGCCACTAAACATCGTTAATCAAACGATACAATCATCAACTGGCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

82.998

99.555

0.826
  ccrA Staphylococcus aureus N315

74.61

100

0.746

Multiple sequence alignment