Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   FO454_RS01960 Genome accession   NZ_CP041722
Coordinates   448157..448822 (-) Length   221 a.a.
NCBI ID   WP_002460617.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SL13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 443157..453822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO454_RS01935 (FO454_01935) - 443347..443826 (-) 480 WP_002478517.1 DUF4064 domain-containing protein -
  FO454_RS01940 (FO454_01940) - 443913..444362 (-) 450 WP_002478516.1 DUF4064 domain-containing protein -
  FO454_RS01945 (FO454_01945) - 444404..446365 (-) 1962 WP_225307314.1 FtsX-like permease family protein -
  FO454_RS01950 (FO454_01950) - 446388..447137 (-) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  FO454_RS01955 (FO454_01955) braS 447243..448151 (-) 909 WP_002478513.1 sensor histidine kinase Regulator
  FO454_RS01960 (FO454_01960) braR 448157..448822 (-) 666 WP_002460617.1 response regulator transcription factor Regulator
  FO454_RS13390 - 449038..449142 (-) 105 Protein_387 hypothetical protein -
  FO454_RS01970 (FO454_01970) - 449361..450809 (+) 1449 WP_002478511.1 alkaline phosphatase -
  FO454_RS01975 (FO454_01975) wecB 450995..452134 (-) 1140 WP_002478510.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  FO454_RS01980 (FO454_01980) - 452177..453448 (-) 1272 WP_002478509.1 nucleotide sugar dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25798.73 Da        Isoelectric Point: 4.6843

>NTDB_id=373373 FO454_RS01960 WP_002460617.1 448157..448822(-) (braR) [Staphylococcus lugdunensis strain SL13]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSWFVKYEPDLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNHNETTVRDCKLIIDEATLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=373373 FO454_RS01960 WP_002460617.1 448157..448822(-) (braR) [Staphylococcus lugdunensis strain SL13]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGGTTCGTAAAGTATGAACCAGATTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CATAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATGATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAACGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.923

100

0.769

Multiple sequence alignment