Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOH38_RS09670 Genome accession   NZ_CP041696
Coordinates   1964939..1965511 (+) Length   190 a.a.
NCBI ID   WP_143996708.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1959939..1970511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS09640 (FOH38_09640) - 1960267..1961151 (+) 885 WP_143996703.1 mechanosensitive ion channel family protein -
  FOH38_RS09645 (FOH38_09645) - 1961152..1961352 (+) 201 WP_143996704.1 DUF951 domain-containing protein -
  FOH38_RS09650 (FOH38_09650) ychF 1961650..1962750 (+) 1101 WP_143996705.1 redox-regulated ATPase YchF -
  FOH38_RS09655 (FOH38_09655) - 1962836..1963852 (+) 1017 WP_143996706.1 acyl-CoA dehydrogenase -
  FOH38_RS09660 (FOH38_09660) - 1963877..1964437 (-) 561 WP_143996707.1 DUF3267 domain-containing protein -
  FOH38_RS09665 (FOH38_09665) rpsF 1964612..1964902 (+) 291 WP_010860723.1 30S ribosomal protein S6 -
  FOH38_RS09670 (FOH38_09670) ssbA 1964939..1965511 (+) 573 WP_143996708.1 single-stranded DNA-binding protein Machinery gene
  FOH38_RS09675 (FOH38_09675) rpsR 1965558..1965794 (+) 237 WP_024364646.1 30S ribosomal protein S18 -
  FOH38_RS09680 (FOH38_09680) - 1966151..1967092 (+) 942 WP_143996709.1 YybS family protein -
  FOH38_RS09685 (FOH38_09685) - 1967105..1969078 (+) 1974 WP_143996710.1 DHH family phosphoesterase -
  FOH38_RS09690 (FOH38_09690) rplI 1969075..1969521 (+) 447 WP_143996711.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20571.56 Da        Isoelectric Point: 4.9533

>NTDB_id=373260 FOH38_RS09670 WP_143996708.1 1964939..1965511(+) (ssbA) [Lysinibacillus fusiformis strain 1226]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGGQPQQQFGGAMPQQGSYGGGSYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=373260 FOH38_RS09670 WP_143996708.1 1964939..1965511(+) (ssbA) [Lysinibacillus fusiformis strain 1226]
ATGATAAACCGTGTCGTACTAGTTGGAAGACTAACAAAAGATCCCGAGCTACGCTACACACCAAATGGTGTTGCGTCTAC
TCGATTTACAGTTGCTGTAAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCCGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCCCCGGCATCTAATCAATACGGTGGACAATCTTACGCAAATAGCCAACCGTCATATGGCGGTGGTGGTC
AACCACAACAACAGTTTGGCGGCGCGATGCCTCAGCAAGGTTCATATGGCGGCGGTTCTTATCAGCAAAATCAACCACCA
ATGAATCAGCCGAACTATACACGTGTAGATGAAGATCCTTTTGCTAACAGTAAGGGGCCGATTGAAGTATCAGAGGATGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5

Multiple sequence alignment