Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FGF55_RS17420 Genome accession   NZ_CP041691
Coordinates   3513358..3514047 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3508358..3519047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS17385 (FGF55_17385) - 3508556..3509038 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FGF55_RS17390 (FGF55_17390) flgM 3509053..3509319 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  FGF55_RS17395 (FGF55_17395) - 3509389..3509808 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  FGF55_RS17400 (FGF55_17400) comFC 3509882..3510571 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  FGF55_RS17405 (FGF55_17405) - 3510577..3510861 (-) 285 WP_014419011.1 competence protein ComFB -
  FGF55_RS17410 (FGF55_17410) comFA 3510919..3512304 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  FGF55_RS17415 (FGF55_17415) - 3512412..3513260 (-) 849 WP_003151387.1 DegV family protein -
  FGF55_RS17420 (FGF55_17420) degU 3513358..3514047 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FGF55_RS17425 (FGF55_17425) degS 3514124..3515287 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  FGF55_RS17430 (FGF55_17430) - 3515510..3516157 (+) 648 WP_007614107.1 YigZ family protein -
  FGF55_RS17435 (FGF55_17435) - 3516162..3517376 (+) 1215 WP_014419013.1 LCP family protein -
  FGF55_RS17440 (FGF55_17440) - 3517466..3518542 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=373139 FGF55_RS17420 WP_003219701.1 3513358..3514047(-) (degU) [Bacillus amyloliquefaciens strain ZJU1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=373139 FGF55_RS17420 WP_003219701.1 3513358..3514047(-) (degU) [Bacillus amyloliquefaciens strain ZJU1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment