Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FGF55_RS17410 Genome accession   NZ_CP041691
Coordinates   3510919..3512304 (-) Length   461 a.a.
NCBI ID   WP_014419012.1    Uniprot ID   I2CAS2
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505919..3517304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS17375 (FGF55_17375) flgL 3506094..3507011 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  FGF55_RS17380 (FGF55_17380) flgK 3507023..3508540 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  FGF55_RS17385 (FGF55_17385) - 3508556..3509038 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FGF55_RS17390 (FGF55_17390) flgM 3509053..3509319 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  FGF55_RS17395 (FGF55_17395) - 3509389..3509808 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  FGF55_RS17400 (FGF55_17400) comFC 3509882..3510571 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  FGF55_RS17405 (FGF55_17405) - 3510577..3510861 (-) 285 WP_014419011.1 competence protein ComFB -
  FGF55_RS17410 (FGF55_17410) comFA 3510919..3512304 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  FGF55_RS17415 (FGF55_17415) - 3512412..3513260 (-) 849 WP_003151387.1 DegV family protein -
  FGF55_RS17420 (FGF55_17420) degU 3513358..3514047 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FGF55_RS17425 (FGF55_17425) degS 3514124..3515287 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  FGF55_RS17430 (FGF55_17430) - 3515510..3516157 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52599.04 Da        Isoelectric Point: 10.2804

>NTDB_id=373138 FGF55_RS17410 WP_014419012.1 3510919..3512304(-) (comFA) [Bacillus amyloliquefaciens strain ZJU1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRLTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=373138 FGF55_RS17410 WP_014419012.1 3510919..3512304(-) (comFA) [Bacillus amyloliquefaciens strain ZJU1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTAAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGCGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2CAS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment