Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BMB171_RS21165 Genome accession   NC_014171
Coordinates   4120375..4121418 (-) Length   347 a.a.
NCBI ID   WP_001013170.1    Uniprot ID   A0A9Q5QS48
Organism   Bacillus thuringiensis BMB171     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4115375..4126418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMB171_RS31650 - 4115440..4115544 (+) 105 Protein_4112 IS3 family transposase -
  BMB171_RS21120 (BMB171_C3901) - 4115808..4116008 (-) 201 WP_000106083.1 YqzE family protein -
  BMB171_RS21125 (BMB171_C3902) aroK 4116047..4116544 (-) 498 WP_000836664.1 shikimate kinase AroK -
  BMB171_RS21130 (BMB171_C3904) - 4116660..4117310 (-) 651 WP_000183856.1 2OG-Fe(II) oxygenase -
  BMB171_RS21135 (BMB171_C3905) comGG 4117485..4117856 (-) 372 WP_001231316.1 competence type IV pilus minor pilin ComGG -
  BMB171_RS21140 (BMB171_C3906) comGF 4117853..4118323 (-) 471 WP_000923101.1 competence type IV pilus minor pilin ComGF -
  BMB171_RS21145 (BMB171_C3907) - 4118293..4118595 (-) 303 WP_000829470.1 hypothetical protein -
  BMB171_RS21150 comGD 4118588..4119043 (-) 456 WP_000813141.1 competence type IV pilus minor pilin ComGD -
  BMB171_RS21155 (BMB171_C3909) comGC 4119040..4119339 (-) 300 WP_001178684.1 competence type IV pilus major pilin ComGC -
  BMB171_RS21160 (BMB171_C3910) comGB 4119351..4120388 (-) 1038 WP_281996736.1 competence type IV pilus assembly protein ComGB -
  BMB171_RS21165 (BMB171_C3911) comGA 4120375..4121418 (-) 1044 WP_001013170.1 competence type IV pilus ATPase ComGA Machinery gene
  BMB171_RS21170 (BMB171_C3912) - 4121624..4122319 (+) 696 WP_000434125.1 helix-turn-helix domain-containing protein -
  BMB171_RS21175 (BMB171_C3913) - 4122445..4122687 (+) 243 WP_000440716.1 DUF2626 domain-containing protein -
  BMB171_RS21180 (BMB171_C3914) - 4122795..4124189 (+) 1395 WP_001094345.1 L-cystine transporter -
  BMB171_RS21185 (BMB171_C3915) - 4124268..4124660 (-) 393 WP_000875398.1 hypothetical protein -
  BMB171_RS21190 (BMB171_C3916) - 4124748..4124963 (-) 216 WP_001008327.1 DUF3912 family protein -
  BMB171_RS21195 (BMB171_C3917) - 4125216..4125527 (+) 312 WP_001093236.1 hypothetical protein -
  BMB171_RS21200 (BMB171_C3918) - 4125562..4126050 (-) 489 WP_000764267.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39095.50 Da        Isoelectric Point: 8.7212

>NTDB_id=37311 BMB171_RS21165 WP_001013170.1 4120375..4121418(-) (comGA) [Bacillus thuringiensis BMB171]
MNGIEIFANAILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEAGGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=37311 BMB171_RS21165 WP_001013170.1 4120375..4121418(-) (comGA) [Bacillus thuringiensis BMB171]
ATGAATGGGATTGAAATTTTTGCGAATGCAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGCGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTTGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCAGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGTGATGAAGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACACTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGCTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAGGCTAGCATATATGAGCTACTATATGGATATGAGTTAAAACAAGCGCTTAAAGAAGCTGGTGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.908

100

0.559
  pilB Haemophilus influenzae 86-028NP

40.062

92.795

0.372

Multiple sequence alignment