Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | VV7356_RS21615 | Genome accession | NZ_CP041683 |
| Coordinates | 4805277..4805867 (+) | Length | 196 a.a. |
| NCBI ID | WP_011079353.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain 7356 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4800277..4810867
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VV7356_RS21600 (VV7356_22185) | oxyR | 4800661..4801560 (+) | 900 | WP_011079350.1 | DNA-binding transcriptional regulator OxyR | - |
| VV7356_RS21605 (VV7356_22190) | - | 4801627..4804140 (-) | 2514 | WP_017789762.1 | penicillin-binding protein 1A | - |
| VV7356_RS21610 (VV7356_22195) | pilM | 4804280..4805287 (+) | 1008 | WP_011079352.1 | type IV pilus assembly protein PilM | Machinery gene |
| VV7356_RS21615 (VV7356_22200) | pilN | 4805277..4805867 (+) | 591 | WP_011079353.1 | PilN domain-containing protein | Machinery gene |
| VV7356_RS21620 (VV7356_22205) | pilO | 4805860..4806450 (+) | 591 | WP_026130598.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VV7356_RS21625 (VV7356_22210) | pilP | 4806440..4806952 (+) | 513 | WP_011079355.1 | pilus assembly protein PilP | Machinery gene |
| VV7356_RS21630 (VV7356_22215) | pilQ | 4806966..4808750 (+) | 1785 | WP_011079356.1 | type IV pilus secretin PilQ | Machinery gene |
| VV7356_RS21635 (VV7356_22220) | aroK | 4808952..4809470 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| VV7356_RS21640 (VV7356_22225) | aroB | 4809503..4810594 (+) | 1092 | WP_017789764.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22672.91 Da Isoelectric Point: 7.6441
>NTDB_id=373033 VV7356_RS21615 WP_011079353.1 4805277..4805867(+) (pilN) [Vibrio vulnificus strain 7356]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
Nucleotide
Download Length: 591 bp
>NTDB_id=373033 VV7356_RS21615 WP_011079353.1 4805277..4805867(+) (pilN) [Vibrio vulnificus strain 7356]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAGATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAGATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
67.956 |
92.347 |
0.628 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
90.306 |
0.571 |