Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VV7356_RS21610 Genome accession   NZ_CP041683
Coordinates   4804280..4805287 (+) Length   335 a.a.
NCBI ID   WP_011079352.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4799280..4810287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS21595 (VV7356_22180) - 4800115..4800387 (-) 273 WP_017789760.1 DUF3624 domain-containing protein -
  VV7356_RS21600 (VV7356_22185) oxyR 4800661..4801560 (+) 900 WP_011079350.1 DNA-binding transcriptional regulator OxyR -
  VV7356_RS21605 (VV7356_22190) - 4801627..4804140 (-) 2514 WP_017789762.1 penicillin-binding protein 1A -
  VV7356_RS21610 (VV7356_22195) pilM 4804280..4805287 (+) 1008 WP_011079352.1 type IV pilus assembly protein PilM Machinery gene
  VV7356_RS21615 (VV7356_22200) pilN 4805277..4805867 (+) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  VV7356_RS21620 (VV7356_22205) pilO 4805860..4806450 (+) 591 WP_026130598.1 type 4a pilus biogenesis protein PilO Machinery gene
  VV7356_RS21625 (VV7356_22210) pilP 4806440..4806952 (+) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  VV7356_RS21630 (VV7356_22215) pilQ 4806966..4808750 (+) 1785 WP_011079356.1 type IV pilus secretin PilQ Machinery gene
  VV7356_RS21635 (VV7356_22220) aroK 4808952..4809470 (+) 519 WP_011079357.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37624.02 Da        Isoelectric Point: 6.3873

>NTDB_id=373032 VV7356_RS21610 WP_011079352.1 4804280..4805287(+) (pilM) [Vibrio vulnificus strain 7356]
MGKPFVTGIDIGHRSLKAVILKPYGEHYALLGYKEIIIKDGIFSDNHTLNHQEIVNSLKELKKELPLFRYQVALAVPDSS
VISKMLSIDAELDGREREFAILQAFAHQSPFPVDELSIDYVQLVEETSKTNHSYQVYATKKEVVESRVRVAEEVGLKPVL
VDVHAHSLCNILTLAAERHPDKASYCLLDVGYDTSSLVMSRRNEPPLVKEFAYGVSHLNASIGDDLTSPDAHEKTDIFNK
ELTERVRRQLQLFQSMDSQSKVNGLWICGEGAITPLLSETLQRKLSLECEVLNPLALFEQKTAKRKRRIVDWHHFSVAAG
LAIGGIQWLEDSHAA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=373032 VV7356_RS21610 WP_011079352.1 4804280..4805287(+) (pilM) [Vibrio vulnificus strain 7356]
ATGGGTAAGCCGTTCGTTACCGGAATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCTTATGGAGAGCA
CTACGCCCTGTTAGGGTACAAAGAAATAATCATTAAAGACGGTATTTTCTCAGATAACCACACTCTGAATCATCAAGAAA
TTGTCAATAGCCTGAAAGAACTGAAGAAGGAACTGCCTCTTTTCCGTTATCAGGTGGCACTGGCGGTGCCTGATAGTTCA
GTGATTAGTAAGATGTTATCGATCGATGCGGAGTTGGATGGTCGAGAGCGAGAATTCGCTATCCTTCAGGCGTTTGCACA
TCAGTCGCCATTTCCTGTCGATGAATTATCGATTGATTATGTCCAATTGGTCGAAGAAACCAGCAAAACGAATCATAGCT
ATCAAGTTTACGCCACCAAAAAAGAGGTGGTGGAAAGCCGTGTGCGTGTCGCAGAAGAAGTGGGACTGAAACCCGTGCTG
GTAGATGTGCATGCGCATAGCCTGTGCAACATCTTAACGTTAGCGGCAGAGCGCCATCCAGATAAAGCTAGCTATTGCTT
GTTGGATGTGGGTTATGACACCTCCTCTTTGGTGATGTCGCGTCGCAACGAACCGCCTTTAGTTAAAGAATTTGCCTATG
GGGTGTCTCACCTCAATGCGTCGATAGGCGACGATCTGACTTCTCCTGATGCTCATGAGAAAACCGACATCTTTAATAAA
GAACTGACAGAGCGAGTTCGTCGGCAATTGCAGCTGTTCCAATCTATGGATAGCCAAAGCAAAGTGAATGGCCTCTGGAT
CTGCGGTGAAGGCGCGATTACTCCGTTGTTGAGTGAAACGTTGCAGAGAAAGCTGAGTTTGGAGTGCGAAGTCCTTAATC
CTCTGGCTCTGTTTGAGCAAAAAACGGCGAAAAGAAAGCGCCGTATTGTTGATTGGCACCATTTTTCGGTGGCAGCGGGA
TTAGCGATTGGTGGCATTCAGTGGCTGGAGGATAGCCATGCAGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

53.731

100

0.537
  pilM Vibrio cholerae strain A1552

49.56

100

0.504

Multiple sequence alignment