Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VV7356_RS15225 Genome accession   NZ_CP041683
Coordinates   3401847..3403340 (-) Length   497 a.a.
NCBI ID   WP_039508536.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3398351..3475124 3401847..3403340 within 0


Gene organization within MGE regions


Location: 3398351..3475124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS15215 (VV7356_15340) - 3399420..3400613 (-) 1194 WP_017790434.1 glycosyltransferase -
  VV7356_RS15220 (VV7356_15345) - 3400721..3401854 (-) 1134 WP_017790433.1 glycosyltransferase -
  VV7356_RS15225 (VV7356_15350) luxO 3401847..3403340 (-) 1494 WP_039508536.1 sigma-54-dependent transcriptional regulator Regulator
  VV7356_RS15230 (VV7356_15355) - 3403497..3405785 (-) 2289 WP_017790432.1 ATP-binding protein -
  VV7356_RS15235 (VV7356_15360) - 3405809..3406609 (-) 801 WP_039508539.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  VV7356_RS15240 (VV7356_15365) - 3406729..3407761 (+) 1033 Protein_2978 IS630 family transposase -
  VV7356_RS15245 (VV7356_15370) - 3407739..3408416 (-) 678 WP_039533157.1 tyrosine-protein kinase family protein -
  VV7356_RS15250 (VV7356_15375) - 3408416..3410470 (-) 2055 WP_411202414.1 SLBB domain-containing protein -
  VV7356_RS15255 (VV7356_15380) - 3410512..3411354 (-) 843 WP_017790429.1 OmpA family protein -
  VV7356_RS15260 (VV7356_15385) - 3411386..3411706 (-) 321 WP_011080500.1 STAS domain-containing protein -
  VV7356_RS15265 (VV7356_15390) - 3412004..3412846 (+) 843 WP_017790428.1 DNA ligase -
  VV7356_RS15270 (VV7356_15395) - 3413096..3415015 (+) 1920 WP_017790427.1 GGDEF domain-containing protein -
  VV7356_RS15275 (VV7356_15400) - 3415117..3415599 (-) 483 WP_017422085.1 YajQ family cyclic di-GMP-binding protein -
  VV7356_RS15280 (VV7356_15405) - 3415625..3416677 (-) 1053 WP_017422084.1 3-deoxy-7-phosphoheptulonate synthase -
  VV7356_RS15285 (VV7356_15410) - 3417018..3417503 (+) 486 WP_011150249.1 PaaI family thioesterase -
  VV7356_RS15290 (VV7356_15415) - 3417506..3418864 (-) 1359 WP_011080494.1 hypothetical protein -
  VV7356_RS15295 (VV7356_15420) - 3418961..3419797 (+) 837 WP_017422083.1 S1 RNA-binding domain-containing protein -
  VV7356_RS15300 (VV7356_15425) rsmF 3420034..3421167 (-) 1134 Protein_2990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
  VV7356_RS15305 (VV7356_15430) - 3421224..3422255 (+) 1032 WP_103195755.1 IS630 family transposase -
  VV7356_RS15310 (VV7356_15435) yebU 3422261..3422551 (-) 291 Protein_2992 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
  VV7356_RS15315 (VV7356_15440) - 3422650..3425307 (-) 2658 WP_039508622.1 MlaD family protein -
  VV7356_RS15320 (VV7356_15445) - 3425291..3426553 (-) 1263 WP_017790426.1 paraquat-inducible protein A -
  VV7356_RS15325 (VV7356_15450) - 3426593..3428392 (-) 1800 WP_017790425.1 ABC transporter ATP-binding protein -
  VV7356_RS15330 (VV7356_15455) - 3428520..3428993 (+) 474 WP_017790424.1 GAF domain-containing protein -
  VV7356_RS15335 (VV7356_15460) proQ 3429093..3429716 (+) 624 WP_013571847.1 RNA chaperone ProQ -
  VV7356_RS15340 (VV7356_15465) prc 3429734..3431734 (+) 2001 WP_017790423.1 carboxy terminal-processing peptidase -
  VV7356_RS15345 (VV7356_15470) - 3431937..3432605 (+) 669 WP_013571845.1 hypothetical protein -
  VV7356_RS15350 (VV7356_15475) pepN 3432885..3435494 (+) 2610 WP_017790422.1 aminopeptidase N -
  VV7356_RS15355 (VV7356_15480) - 3435543..3435761 (+) 219 WP_011080483.1 DUF2835 domain-containing protein -
  VV7356_RS15360 (VV7356_15485) - 3435969..3440810 (+) 4842 WP_026130750.1 NAD-glutamate dehydrogenase -
  VV7356_RS15365 (VV7356_15490) pyrD 3441108..3442118 (+) 1011 WP_017790420.1 quinone-dependent dihydroorotate dehydrogenase -
  VV7356_RS15370 (VV7356_15495) - 3442274..3442816 (+) 543 WP_011080480.1 cell division protein ZapC -
  VV7356_RS15375 (VV7356_15500) rlmKL 3443310..3445433 (+) 2124 WP_017790419.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  VV7356_RS15380 (VV7356_15505) - 3445445..3445687 (+) 243 WP_026050687.1 glutaredoxin family protein -
  VV7356_RS15385 (VV7356_15510) - 3445665..3447584 (+) 1920 WP_017790418.1 ABC transporter ATP-binding protein -
  VV7356_RS15390 (VV7356_15515) - 3447592..3449298 (+) 1707 WP_017790417.1 DUF3466 family protein -
  VV7356_RS15395 (VV7356_15520) rmf 3449464..3449637 (+) 174 WP_011080475.1 ribosome modulation factor -
  VV7356_RS15400 (VV7356_15525) fabA 3449779..3450297 (-) 519 WP_011080474.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  VV7356_RS15405 (VV7356_15530) - 3450369..3452012 (-) 1644 WP_011080473.1 Lon protease family protein -
  VV7356_RS15410 (VV7356_15535) matP 3452201..3452650 (+) 450 WP_011150268.1 macrodomain Ter protein MatP -
  VV7356_RS15415 (VV7356_15540) - 3452666..3452977 (+) 312 WP_017790416.1 DUF3634 family protein -
  VV7356_RS15420 (VV7356_15545) - 3453082..3453408 (+) 327 WP_017422065.1 hypothetical protein -
  VV7356_RS15425 (VV7356_15550) - 3453599..3454816 (+) 1218 WP_017790415.1 HDOD domain-containing protein -
  VV7356_RS15430 (VV7356_15560) - 3455315..3455521 (-) 207 WP_017789049.1 hypothetical protein -
  VV7356_RS15435 (VV7356_15565) - 3455722..3456372 (-) 651 WP_017789048.1 hypothetical protein -
  VV7356_RS15440 (VV7356_15570) - 3456486..3456833 (-) 348 WP_017789047.1 DUF1293 family protein -
  VV7356_RS15445 (VV7356_15575) - 3456837..3458132 (-) 1296 WP_017789046.1 replication initiation factor domain-containing protein -
  VV7356_RS15450 (VV7356_15580) - 3458129..3458320 (-) 192 WP_011152123.1 hypothetical protein -
  VV7356_RS15455 (VV7356_15585) - 3458440..3458913 (+) 474 WP_017789045.1 helix-turn-helix domain-containing protein -
  VV7356_RS15460 (VV7356_15595) - 3459687..3459893 (-) 207 WP_017789049.1 hypothetical protein -
  VV7356_RS15465 (VV7356_15600) - 3460094..3460744 (-) 651 WP_017789048.1 hypothetical protein -
  VV7356_RS15470 (VV7356_15605) - 3460858..3461205 (-) 348 WP_017789047.1 DUF1293 family protein -
  VV7356_RS15475 (VV7356_15610) - 3461209..3462504 (-) 1296 WP_017789046.1 replication initiation factor domain-containing protein -
  VV7356_RS15480 (VV7356_15615) - 3462501..3462692 (-) 192 WP_011152123.1 hypothetical protein -
  VV7356_RS15485 (VV7356_15620) - 3462812..3463285 (+) 474 WP_017789045.1 helix-turn-helix domain-containing protein -
  VV7356_RS15490 (VV7356_15625) - 3463566..3464597 (-) 1032 WP_103195755.1 IS630 family transposase -
  VV7356_RS15495 (VV7356_15630) - 3464905..3466614 (-) 1710 WP_017790414.1 ATP-binding protein -
  VV7356_RS15500 (VV7356_15635) - 3466616..3467815 (-) 1200 WP_026130749.1 FIST signal transduction protein -
  VV7356_RS15505 (VV7356_15640) - 3467931..3468287 (-) 357 WP_017790412.1 hypothetical protein -
  VV7356_RS15510 (VV7356_15645) ccoN 3468538..3469971 (+) 1434 WP_011080466.1 cytochrome-c oxidase, cbb3-type subunit I -
  VV7356_RS15515 (VV7356_15650) ccoO 3469984..3470604 (+) 621 WP_017790411.1 cytochrome-c oxidase, cbb3-type subunit II -
  VV7356_RS15520 (VV7356_15655) - 3470616..3470789 (+) 174 WP_011080464.1 cbb3-type cytochrome oxidase subunit 3 -
  VV7356_RS15525 (VV7356_15660) ccoP 3470789..3471766 (+) 978 WP_017422059.1 cytochrome-c oxidase, cbb3-type subunit III -
  VV7356_RS15530 (VV7356_15665) - 3471853..3472329 (+) 477 WP_017790410.1 FixH family protein -
  VV7356_RS15535 (VV7356_15670) - 3472334..3474703 (+) 2370 WP_017790409.1 heavy metal translocating P-type ATPase -
  VV7356_RS15540 (VV7356_15675) ccoS 3474707..3474877 (+) 171 WP_011080460.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55752.76 Da        Isoelectric Point: 6.5537

>NTDB_id=373014 VV7356_RS15225 WP_039508536.1 3401847..3403340(-) (luxO) [Vibrio vulnificus strain 7356]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDIPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEVKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNMEHLPAQLTTKPQTVNEPAKL
SVPPQPVQAAIQERHNGHEALNHHSLETQTSKANPLAHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=373014 VV7356_RS15225 WP_039508536.1 3401847..3403340(-) (luxO) [Vibrio vulnificus strain 7356]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAGCCCTA
TGATATTTTTCACGTAGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACGCCGCAACTGGTGATTTTAGATC
TCAAGTTGCCCGACATGTCCGGGGAGGATGTGCTCGACTGGATCAACCAAAACGATATTCCAACCGCGGTTATCATCGCC
ACCGCTCATGGTTCCGTTGACATCGCTGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTGAAAACATCCATTGCAGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGACCACGTTATCATGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCG
CCAACCACCGCCAGTGTTTTTATCAACGGAGAAAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATCCACAAACAGAG
TCTGCGCAAAGAACAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACCGGAGCGACAACCGACCGAAAAGGTGCGGCAATGCTGGCCAACGGCGGCACTTTGTTTCTC
GATGAATTGTGCGAAATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACCGGTACCTTCACCCCACTCGG
CGGCAGTAAAGAAGTTAAAGTGGATGTGCGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCCATTGAAATGCCACCACTGAGAGAACGCGGTAACGACATC
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAGGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCGCA
ATCAATACTTAAAAAATACAACTGGCCGGGCAATGTCCGTCAGTTGCAAAACATCATTCGCAACATCGTCGTTCTCAACG
ATGACAACCAACTGAATATGGAACATTTGCCGGCTCAACTCACCACCAAACCGCAAACCGTCAATGAACCCGCTAAACTC
TCAGTACCACCTCAACCGGTTCAAGCGGCCATCCAAGAGAGGCACAACGGACATGAGGCGTTAAACCATCATTCGCTTGA
GACGCAAACATCCAAGGCCAATCCACTCGCTCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAGCGCGAAGCAATTCAAAACGCCATCGCCTTTTGCGACGGCAACGTGATCAGTGCGGCGGTGATGTTGGAGCTAAGC
CCTTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

51.235

97.787

0.501
  pilR Acinetobacter baumannii strain A118

37.219

98.39

0.366

Multiple sequence alignment