Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FOG18_RS11790 Genome accession   NZ_CP041668
Coordinates   2638021..2638722 (+) Length   233 a.a.
NCBI ID   WP_244946889.1    Uniprot ID   -
Organism   Legionella israelensis strain L18-01051     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2633021..2643722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG18_RS11765 (FOG18_11765) radA 2633465..2634820 (-) 1356 WP_058500665.1 DNA repair protein RadA -
  FOG18_RS11770 (FOG18_11770) - 2634891..2635553 (-) 663 WP_143868916.1 hypothetical protein -
  FOG18_RS11775 (FOG18_11775) - 2635997..2636227 (+) 231 WP_058500663.1 exodeoxyribonuclease VII small subunit -
  FOG18_RS11780 (FOG18_11780) - 2636220..2637128 (+) 909 WP_143869550.1 polyprenyl synthetase family protein -
  FOG18_RS11785 (FOG18_11785) bioC 2637113..2637979 (-) 867 WP_058500685.1 malonyl-ACP O-methyltransferase BioC -
  FOG18_RS11790 (FOG18_11790) comFC 2638021..2638722 (+) 702 WP_244946889.1 ComF family protein Machinery gene
  FOG18_RS11795 (FOG18_11795) - 2638932..2640005 (-) 1074 WP_143868918.1 site-2 protease family protein -
  FOG18_RS11800 (FOG18_11800) - 2640022..2640306 (-) 285 WP_143868920.1 hypothetical protein -
  FOG18_RS11805 (FOG18_11805) - 2640722..2641606 (+) 885 WP_143868922.1 hypothetical protein -
  FOG18_RS11810 (FOG18_11810) hemA 2641708..2642982 (+) 1275 WP_143868924.1 glutamyl-tRNA reductase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26728.77 Da        Isoelectric Point: 9.4469

>NTDB_id=372953 FOG18_RS11790 WP_244946889.1 2638021..2638722(+) (comFC) [Legionella israelensis strain L18-01051]
MLQIFASITQRLRFPTVCLLCKQYQRDAQFICKDCLCLFKPIKYGCKYCACPLPDAHFPVCGACSTKQPDFDRAIIAYPY
EEPLRTLIHQFKYQEKLYLVSFLSQLMLPFLKECDEIPQCLIPVPMHPQRLKQRGFNQAAVLTKALAKKMHLPYQLQGCQ
KIINTKPQASLDKKQRAKNLRQAFTINTLPYQHIALVDDLLTTGNTANELARAFKKKGVLRVDVWCCARAVLA

Nucleotide


Download         Length: 702 bp        

>NTDB_id=372953 FOG18_RS11790 WP_244946889.1 2638021..2638722(+) (comFC) [Legionella israelensis strain L18-01051]
GTGCTTCAGATTTTCGCCAGTATAACACAGAGACTGCGTTTTCCTACAGTCTGTCTATTATGCAAACAATATCAACGTGA
TGCCCAATTCATCTGCAAAGATTGTCTCTGTCTTTTTAAGCCGATAAAATATGGCTGTAAATACTGCGCCTGCCCCCTTC
CAGATGCCCATTTTCCAGTGTGCGGAGCCTGCAGCACAAAGCAACCTGATTTTGACCGTGCCATTATCGCTTATCCTTAT
GAAGAACCTTTACGAACCCTTATTCATCAATTCAAATATCAGGAAAAACTCTATCTGGTCTCTTTTCTAAGCCAGTTAAT
GCTTCCTTTTCTAAAAGAATGCGATGAAATCCCTCAATGCCTTATACCGGTCCCTATGCACCCTCAGCGGCTGAAACAAA
GAGGTTTTAATCAGGCTGCCGTACTTACCAAAGCTTTGGCGAAAAAAATGCATCTTCCCTATCAACTGCAAGGATGTCAA
AAAATCATCAATACTAAACCCCAGGCCAGTCTTGATAAAAAGCAGCGGGCAAAAAATCTCAGGCAGGCATTTACAATCAA
TACCTTGCCTTATCAACATATCGCGCTTGTCGATGATCTTTTAACCACAGGAAATACGGCTAATGAATTAGCACGAGCTT
TCAAGAAAAAAGGCGTTCTGCGGGTGGACGTCTGGTGCTGTGCTCGAGCCGTATTGGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

57.576

99.142

0.571
  comFC Legionella pneumophila strain ERS1305867

61.828

79.828

0.494

Multiple sequence alignment