Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FKG96_RS02580 Genome accession   NZ_CP041643
Coordinates   649553..650938 (-) Length   461 a.a.
NCBI ID   WP_130854755.1    Uniprot ID   A0A5C0ZDS2
Organism   Olivibacter sp. LS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 644553..655938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKG96_RS02570 (FKG96_02570) - 647818..648960 (-) 1143 WP_013664421.1 efflux RND transporter periplasmic adaptor subunit -
  FKG96_RS02575 (FKG96_02575) - 649082..649498 (-) 417 WP_013664422.1 hypothetical protein -
  FKG96_RS02580 (FKG96_02580) radA 649553..650938 (-) 1386 WP_130854755.1 DNA repair protein RadA Machinery gene
  FKG96_RS02585 (FKG96_02585) - 651144..652697 (-) 1554 WP_013664424.1 Rne/Rng family ribonuclease -
  FKG96_RS02590 (FKG96_02590) - 653047..653889 (-) 843 WP_130854754.1 tetratricopeptide repeat protein -
  FKG96_RS02595 (FKG96_02595) - 653918..654202 (-) 285 WP_013664426.1 HU family DNA-binding protein -
  FKG96_RS02600 (FKG96_02600) mutY 654710..655768 (+) 1059 WP_130854753.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50862.36 Da        Isoelectric Point: 6.4233

>NTDB_id=372715 FKG96_RS02580 WP_130854755.1 649553..650938(-) (radA) [Olivibacter sp. LS-1]
MAKAKTVYFCQNCGYESAKWLGKCPSCNQWNTFVEELVEKGGNKVPDWRSGSVVSGERKPNKAAVIHEINYEEEARLKTP
DNEMNRVLGGGVVPGSLVLIGGEPGIGKSTLMLQLALTIPGIKTLYVSGEESEQQIKMRAERLLQSSKADCYILTETSTQ
NIFKQIASVEPHLVIIDSIQTLHSSQIESTPGSVSQVRECTAELLRFAKESSTPVFIVGHITKDGAIAGPKVLEHMVDTV
LQFEGDRHHMYRILRAVKNRFGSSSELGIYEMVHNGLREVSNPSEILLSQREFPISGVTIAAMLEGIRPMLIEVQALVGN
SAYGTPQRSSTGFDTRRMNMLLAVLEKRFGFRLSTQDVFLNIAGGLRVEDPAIDLAVIVAILSSQQDIAVPTHIAFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEEIYISKYNNKGLDTSKYNIKINWMAKVEEIFQAIFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=372715 FKG96_RS02580 WP_130854755.1 649553..650938(-) (radA) [Olivibacter sp. LS-1]
ATGGCAAAAGCGAAAACAGTATATTTCTGTCAAAATTGTGGATACGAATCGGCTAAATGGCTTGGTAAATGTCCTTCCTG
CAATCAATGGAATACTTTTGTAGAAGAACTGGTTGAAAAGGGTGGGAATAAAGTGCCTGACTGGAGAAGTGGCAGCGTTG
TGTCGGGGGAAAGAAAACCCAATAAAGCCGCTGTTATTCATGAGATCAACTATGAGGAAGAGGCGAGACTGAAGACCCCT
GACAATGAAATGAACCGGGTGCTAGGCGGTGGGGTTGTACCTGGATCATTGGTGCTAATAGGAGGGGAGCCAGGTATCGG
TAAATCAACATTAATGCTGCAACTTGCTTTAACCATACCAGGTATAAAGACATTATATGTTTCGGGAGAGGAAAGCGAAC
AACAGATCAAAATGCGAGCAGAGAGGCTACTCCAATCCTCAAAGGCGGATTGCTATATTCTCACGGAAACCTCTACTCAA
AATATATTTAAGCAGATTGCGTCTGTAGAACCACATTTAGTTATTATCGATTCCATCCAAACCTTACATTCTTCACAGAT
CGAATCGACGCCTGGCAGCGTGTCACAGGTAAGGGAATGCACGGCTGAACTATTGCGCTTTGCCAAGGAATCTTCCACGC
CCGTATTTATTGTGGGCCATATTACTAAAGACGGTGCAATTGCGGGACCAAAAGTGCTCGAACATATGGTAGATACTGTT
TTACAATTTGAAGGAGATCGGCATCATATGTATCGGATTCTGCGGGCCGTAAAGAACCGATTCGGTTCGTCTTCGGAGTT
GGGGATATACGAAATGGTTCATAATGGATTAAGGGAGGTTTCCAACCCATCTGAGATTTTGCTTTCACAGCGTGAATTTC
CTATAAGTGGCGTCACCATAGCCGCTATGCTCGAAGGGATACGGCCTATGCTAATCGAAGTACAGGCACTGGTGGGAAAT
TCTGCCTATGGTACACCTCAACGCTCGTCAACCGGATTTGATACGAGAAGAATGAACATGTTGCTGGCGGTTCTGGAAAA
GCGATTTGGCTTCCGGTTGAGCACGCAGGACGTGTTCTTAAATATAGCTGGCGGATTGCGTGTGGAAGATCCGGCCATTG
ATCTTGCAGTAATTGTGGCCATTCTTTCTTCGCAGCAGGATATCGCCGTCCCTACGCATATTGCCTTTGCCGGCGAAGTA
GGGCTTTCGGGTGAAATTCGAGCAGTAAATCGAATCGAACAGCGAATCGCTGAAGCAGAAAAGCTTGGCTTTGAAGAGAT
TTATATATCAAAATACAACAACAAAGGCTTAGATACTTCAAAATATAACATTAAAATTAACTGGATGGCTAAAGTAGAAG
AGATTTTTCAGGCAATATTTGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0ZDS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.404

100

0.516
  radA Streptococcus mitis NCTC 12261

51.404

100

0.516
  radA Streptococcus mitis SK321

51.404

100

0.516
  radA Streptococcus pneumoniae Rx1

51.404

100

0.516
  radA Streptococcus pneumoniae D39

51.404

100

0.516
  radA Streptococcus pneumoniae R6

51.404

100

0.516
  radA Streptococcus pneumoniae TIGR4

51.404

100

0.516

Multiple sequence alignment