Detailed information NTG0372708

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DIJ67_RS21610
• Genome accession: NZ_CP041639
• Coordinates: 4303884..4304684 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain PIMB15ND2KP27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4298884..4309684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DIJ67_RS21575 (DIJ67_21575)	gspH	4299041..4299556 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
DIJ67_RS21580 (DIJ67_21580)	gspI	4299553..4299918 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
DIJ67_RS21585 (DIJ67_21585)	gspJ	4299915..4300511 (+)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
DIJ67_RS21590 (DIJ67_21590)	gspK	4300508..4301494 (+)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
DIJ67_RS21595 (DIJ67_21595)	gspL	4301481..4302674 (+)	1194	WP_032428212.1	type II secretion system protein GspL	-
DIJ67_RS21600 (DIJ67_21600)	-	4302667..4303152 (+)	486	WP_004151943.1	type II secretion system protein M	-
DIJ67_RS21605 (DIJ67_21605)	-	4303232..4303887 (+)	656	Protein_4217	type II secretion system protein N	-
DIJ67_RS21610 (DIJ67_21610)	pilD	4303884..4304684 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
DIJ67_RS21615 (DIJ67_21615)	hrpB	4304732..4307161 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
DIJ67_RS21620 (DIJ67_21620)	thpR	4307234..4307770 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
DIJ67_RS21625 (DIJ67_21625)	sfsA	4307770..4308486 (+)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
DIJ67_RS21630 (DIJ67_21630)	dksA	4308649..4309104 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=372708 DIJ67_RS21610 WP_004145898.1 4303884..4304684(+) (pilD) [Klebsiella pneumoniae strain PIMB15ND2KP27]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=372708 DIJ67_RS21610 WP_004145898.1 4303884..4304684(+) (pilD) [Klebsiella pneumoniae strain PIMB15ND2KP27]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425