Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVULP_RS04535 Genome accession   NZ_CP041617
Coordinates   885702..886481 (-) Length   259 a.a.
NCBI ID   WP_099507518.1    Uniprot ID   -
Organism   Campylobacter vulpis strain 251/13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 880702..891481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVULP_RS04510 (CVULP_0879) glmU 881824..883110 (-) 1287 WP_099507516.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CVULP_RS04515 (CVULP_0880) fliP 883228..883962 (+) 735 WP_099507517.1 flagellar type III secretion system pore protein FliP -
  CVULP_RS04520 (CVULP_0881) - 883959..884177 (-) 219 WP_099461542.1 hypothetical protein -
  CVULP_RS04525 (CVULP_0882) - 884469..885335 (-) 867 WP_099461543.1 SAM-dependent methyltransferase -
  CVULP_RS04530 (CVULP_0883) ruvX 885325..885705 (-) 381 WP_099461544.1 Holliday junction resolvase RuvX -
  CVULP_RS04535 (CVULP_0884) dprA 885702..886481 (-) 780 WP_099507518.1 DNA-processing protein DprA Machinery gene
  CVULP_RS04540 (CVULP_0885) - 886474..887532 (-) 1059 WP_099507519.1 divergent polysaccharide deacetylase family protein -
  CVULP_RS04545 (CVULP_0886) ilvC 887534..888553 (-) 1020 WP_099507520.1 ketol-acid reductoisomerase -
  CVULP_RS04550 (CVULP_0887) - 888661..890580 (+) 1920 WP_099507521.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28833.59 Da        Isoelectric Point: 8.5878

>NTDB_id=372474 CVULP_RS04535 WP_099507518.1 885702..886481(-) (dprA) [Campylobacter vulpis strain 251/13]
MNSEVLPSAYLSLFNALKDKPKSLYFKGNLELLSYPKVAIIGSRKMSVYTKNCVLELATTLKNAGVCVVSGGALGVDINA
ALGSLPLHIGIFANGLKHIYPRTNEKLIKEIYAKGLALSENEDAYMPQGFDFLLRNRLIIALSEAVVIAQAHLQSGSMQS
ARLSLQMQKPLFVLPQRLEESLGTNLLLQDKKANLIADFRTFAAHFGRVKEESYEDEFLQFCQKGVSVEQALQKYGEKVY
EYELEGKIAIDGIWIRLLK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=372474 CVULP_RS04535 WP_099507518.1 885702..886481(-) (dprA) [Campylobacter vulpis strain 251/13]
ATGAATAGTGAAGTTTTACCTAGTGCTTATTTAAGTCTTTTTAACGCCTTAAAAGATAAGCCTAAAAGCCTTTATTTTAA
AGGAAATTTGGAGCTTTTATCCTATCCTAAGGTCGCTATTATAGGCTCTAGAAAGATGAGTGTTTATACAAAAAATTGCG
TTTTAGAATTAGCCACTACTCTTAAAAACGCTGGAGTTTGCGTAGTAAGTGGAGGGGCTTTGGGCGTGGATATCAATGCG
GCTTTAGGCTCTTTGCCTCTACATATAGGCATTTTTGCTAATGGTTTAAAGCACATTTACCCACGCACAAATGAAAAGCT
TATTAAAGAAATTTACGCTAAAGGCTTGGCTTTAAGTGAAAATGAGGACGCTTATATGCCTCAGGGCTTTGATTTTTTGC
TAAGAAACCGCCTTATTATCGCCTTAAGTGAGGCTGTTGTCATTGCACAAGCACATCTTCAAAGTGGTTCTATGCAAAGT
GCTAGGCTAAGTTTGCAAATGCAAAAACCACTTTTTGTTCTCCCGCAAAGATTGGAGGAAAGCCTTGGAACTAATTTACT
TTTACAGGATAAAAAGGCAAATTTGATAGCGGATTTTAGGACTTTTGCGGCACATTTTGGAAGGGTAAAAGAAGAAAGCT
ATGAAGATGAATTTTTGCAATTTTGTCAAAAGGGTGTGAGTGTGGAGCAAGCCTTGCAAAAATATGGCGAAAAGGTTTAT
GAATATGAGCTTGAGGGTAAAATCGCCATCGATGGCATTTGGATAAGGCTTTTAAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.341

99.614

0.641
  dprA Helicobacter pylori 26695

49.603

97.297

0.483

Multiple sequence alignment