Detailed information NTG0372413

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FK728_RS19175
• Genome accession: NZ_CP041587
• Coordinates: 413255..414115 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152272.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain J9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 408255..419115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FK728_RS01950 (FK728_00390)	-	409146..410456 (+)	1311	WP_000753292.1	tetratricopeptide repeat protein	-
FK728_RS01955 (FK728_00391)	-	410533..410859 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
FK728_RS01960 (FK728_00392)	rlmB	410961..411710 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FK728_RS01965 (FK728_00393)	-	411746..412660 (+)	915	WP_000075011.1	DMT family transporter	-
FK728_RS01970 (FK728_00394)	coaE	412657..413253 (-)	597	WP_000874126.1	dephospho-CoA kinase	-
FK728_RS19175 (FK728_00395)	pilD	413255..414115 (-)	861	WP_001152272.1	prepilin peptidase	Machinery gene
FK728_RS01980 (FK728_00396)	pilC	414115..415341 (-)	1227	WP_000279220.1	type II secretion system F family protein	Machinery gene
FK728_RS01985 (FK728_00397)	pilB	415371..417083 (-)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FK728_RS01990 (FK728_00398)	tpiA	417374..418168 (+)	795	WP_000016935.1	triose-phosphate isomerase	-
FK728_RS01995 (FK728_00399)	secG	418181..418510 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32145.52 Da
• Isoelectric Point: 7.1041

>NTDB_id=372413 FK728_RS19175 WP_001152272.1 413255..414115(-) (pilD) [Acinetobacter baumannii strain J9]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPFIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=372413 FK728_RS19175 WP_001152272.1 413255..414115(-) (pilD) [Acinetobacter baumannii strain J9]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGTTTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441