Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FK728_RS16085 Genome accession   NZ_CP041587
Coordinates   3392536..3393171 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain J9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3387536..3398171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS16070 (FK728_03186) adeT2 3388596..3389582 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  FK728_RS16075 (FK728_03187) - 3389662..3390477 (-) 816 WP_000547771.1 NAD-dependent epimerase/dehydratase family protein -
  FK728_RS16080 (FK728_03188) recG 3390498..3392543 (+) 2046 WP_000204955.1 ATP-dependent DNA helicase RecG -
  FK728_RS16085 (FK728_03189) comF 3392536..3393171 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  FK728_RS16090 (FK728_03190) - 3393174..3393575 (-) 402 WP_000849701.1 NUDIX hydrolase -
  FK728_RS16095 (FK728_03191) - 3393590..3394171 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  FK728_RS16100 (FK728_03192) - 3394329..3395342 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  FK728_RS16105 (FK728_03193) - 3395412..3395699 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  FK728_RS16110 (FK728_03194) - 3395711..3396352 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  FK728_RS16115 (FK728_03195) - 3396379..3397059 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FK728_RS16120 (FK728_03196) mlaE 3397059..3397835 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=372399 FK728_RS16085 WP_000472273.1 3392536..3393171(+) (comF) [Acinetobacter baumannii strain J9]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=372399 FK728_RS16085 WP_000472273.1 3392536..3393171(+) (comF) [Acinetobacter baumannii strain J9]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991

Multiple sequence alignment