Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FNL98_RS12075 Genome accession   NZ_CP041585
Coordinates   2064509..2064826 (+) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1711654     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2059509..2069826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL98_RS12045 (FNL98_12045) - 2060108..2061759 (-) 1652 Protein_2083 LTA synthase family protein -
  FNL98_RS12050 (FNL98_12050) gmhB 2061902..2062465 (+) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  FNL98_RS12055 (FNL98_12055) - 2062495..2063238 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FNL98_RS12060 (FNL98_12060) - 2063235..2063924 (+) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  FNL98_RS13365 - 2063988..2064179 (-) 192 WP_014580443.1 hypothetical protein -
  FNL98_RS12075 (FNL98_12075) pilE 2064509..2064826 (+) 318 WP_003697861.1 pilin Machinery gene
  FNL98_RS14115 (FNL98_12080) - 2064792..2065478 (+) 687 WP_143824052.1 pilin -
  FNL98_RS12085 (FNL98_12085) - 2066004..2066443 (+) 440 Protein_2090 pilin -
  FNL98_RS12090 (FNL98_12090) - 2066575..2066971 (+) 397 Protein_2091 pilin -
  FNL98_RS12095 (FNL98_12095) - 2067024..2067371 (+) 348 Protein_2092 pilin -
  FNL98_RS13515 (FNL98_12100) - 2067428..2067913 (+) 486 WP_125121586.1 pilin -
  FNL98_RS12110 (FNL98_12110) - 2068045..2068430 (+) 386 Protein_2094 pilin -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=372366 FNL98_RS12075 WP_003697861.1 2064509..2064826(+) (pilE) [Neisseria gonorrhoeae strain NJ1711654]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=372366 FNL98_RS12075 WP_003697861.1 2064509..2064826(+) (pilE) [Neisseria gonorrhoeae strain NJ1711654]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment