Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   G5S31_RS07765 Genome accession   NZ_CP049090
Coordinates   1617195..1618571 (-) Length   458 a.a.
NCBI ID   WP_005711784.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612195..1623571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS07740 (G5S31_07725) - 1612464..1613252 (+) 789 WP_234888237.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  G5S31_RS07745 (G5S31_07730) - 1613447..1614121 (+) 675 WP_042906651.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  G5S31_RS07750 (G5S31_07735) - 1614165..1615619 (-) 1455 WP_062924312.1 aminoacyl-histidine dipeptidase -
  G5S31_RS07755 (G5S31_07740) gpt 1615799..1616278 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  G5S31_RS07760 (G5S31_07745) gmk 1616516..1617142 (+) 627 WP_071610761.1 guanylate kinase -
  G5S31_RS07765 (G5S31_07750) radA/sms 1617195..1618571 (-) 1377 WP_005711784.1 DNA repair protein RadA Machinery gene
  G5S31_RS07770 (G5S31_07755) pilA 1618759..1619223 (+) 465 WP_160405122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G5S31_RS07775 (G5S31_07760) pilB 1619270..1620655 (+) 1386 WP_160405120.1 GspE/PulE family protein Machinery gene
  G5S31_RS07780 (G5S31_07765) pilC 1620648..1621844 (+) 1197 WP_160405118.1 type II secretion system F family protein Machinery gene
  G5S31_RS07785 (G5S31_07770) - 1621841..1622509 (+) 669 WP_160405116.1 prepilin peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49531.18 Da        Isoelectric Point: 7.6964

>NTDB_id=372347 G5S31_RS07765 WP_005711784.1 1617195..1618571(-) (radA/sms) [Glaesserella parasuis strain aHPS7]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=372347 G5S31_RS07765 WP_005711784.1 1617195..1618571(-) (radA/sms) [Glaesserella parasuis strain aHPS7]
ATGGCAAAAGCACCAAAAACTGCGTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGACAGTGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGTAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGGCTGTCTGAAATTGATTTGCAGGAAGTGCCTCGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTAGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCTGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCACAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGATAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCCAAACTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGGCACGTTACGAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCAGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTACTGGCACTCATTTCTAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43