Detailed information NTG0372331

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FNL98_RS01590
• Genome accession: NZ_CP041585
• Coordinates: 269815..270675 (-)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain NJ1711654
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 264815..275675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNL98_RS01545 (FNL98_01545)	rplU	264928..265236 (-)	309	WP_003691838.1	50S ribosomal protein L21	-
FNL98_RS01555 (FNL98_01555)	-	265460..266434 (+)	975	WP_003689819.1	polyprenyl synthetase family protein	-
FNL98_RS01560 (FNL98_01560)	-	266438..266884 (+)	447	WP_003689818.1	DUF441 domain-containing protein	-
FNL98_RS01575 (FNL98_01575)	pilF	267222..268898 (+)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FNL98_RS01580 (FNL98_01580)	-	268984..269193 (-)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
FNL98_RS01585 (FNL98_01585)	coaE	269186..269818 (-)	633	WP_003689816.1	dephospho-CoA kinase	-
FNL98_RS01590 (FNL98_01590)	pilD	269815..270675 (-)	861	WP_003689814.1	A24 family peptidase	Machinery gene
FNL98_RS01595 (FNL98_01595)	pilG	270749..271981 (-)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
FNL98_RS01605 (FNL98_01605)	pgi	272491..274134 (+)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
FNL98_RS01610 (FNL98_01610)	dapD	274344..275165 (+)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=372331 FNL98_RS01590 WP_003689814.1 269815..270675(-) (pilD) [Neisseria gonorrhoeae strain NJ1711654]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=372331 FNL98_RS01590 WP_003689814.1 269815..270675(-) (pilD) [Neisseria gonorrhoeae strain NJ1711654]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441