Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G5S31_RS03525 Genome accession   NZ_CP049090
Coordinates   700879..701388 (-) Length   169 a.a.
NCBI ID   WP_021119079.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 695879..706388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS03505 (G5S31_03505) hscA 696342..698198 (+) 1857 WP_021113877.1 Fe-S protein assembly chaperone HscA -
  G5S31_RS03510 (G5S31_03510) fdx 698293..698634 (+) 342 WP_010785894.1 ISC system 2Fe-2S type ferredoxin -
  G5S31_RS03515 (G5S31_03515) iscX 698634..698828 (+) 195 WP_005711410.1 Fe-S cluster assembly protein IscX -
  G5S31_RS03520 (G5S31_03520) - 698913..700763 (-) 1851 WP_021119080.1 ABC transporter ATP-binding protein -
  G5S31_RS03525 (G5S31_03525) luxS 700879..701388 (-) 510 WP_021119079.1 S-ribosylhomocysteine lyase Regulator
  G5S31_RS03530 (G5S31_03530) typA 701652..703499 (+) 1848 WP_160404635.1 translational GTPase TypA -
  G5S31_RS03535 (G5S31_03535) - 703548..703811 (+) 264 WP_012621534.1 GrxA family glutaredoxin -
  G5S31_RS03540 (G5S31_03540) - 704203..704547 (-) 345 WP_021112247.1 DUF5339 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18963.72 Da        Isoelectric Point: 5.5889

>NTDB_id=372329 G5S31_RS03525 WP_021119079.1 700879..701388(-) (luxS) [Glaesserella parasuis strain aHPS7]
MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGNTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDESKIPELNEYQCGSYKEHSLADAHEIARNVLKQPIGINRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=372329 G5S31_RS03525 WP_021119079.1 700879..701388(-) (luxS) [Glaesserella parasuis strain aHPS7]
ATGCCTTTACTAGATAGCTTTAAAGTTGACCACACCAAAATGAATGCCCCAGCAGTGCGTGTTGCAAAAACCATGACAAC
CCCGAAGGGCAATACGATTACTGTATTTGATTTACGTTTTGTCCGTCCAAACATTGAGATTTTATCGCCTCGTGGTATTC
ATACCATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCG
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCGGCTGAAGAAGTGGCAAAAGCGTGGGAAGCCTC
TATGCGTGATGCGTTAGAAAAAGTGCCTGATGAGTCTAAAATTCCTGAATTAAACGAATATCAATGTGGCTCTTATAAAG
AACACTCTTTAGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACGAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

69.643

99.408

0.692

Multiple sequence alignment