Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G5S31_RS03230 Genome accession   NZ_CP049090
Coordinates   639955..640584 (-) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 634955..645584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS03215 (G5S31_03215) ligA 635650..637677 (+) 2028 WP_160404627.1 NAD-dependent DNA ligase LigA -
  G5S31_RS03220 (G5S31_03220) recQ 637735..639564 (-) 1830 WP_021112088.1 ATP-dependent DNA helicase RecQ Machinery gene
  G5S31_RS03225 (G5S31_03225) cyaY 639564..639872 (-) 309 WP_010785933.1 iron donor protein CyaY -
  G5S31_RS03230 (G5S31_03230) dinR/lexA 639955..640584 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  G5S31_RS03235 (G5S31_03235) - 640825..641271 (+) 447 WP_021112089.1 DoxX family protein -
  G5S31_RS03240 (G5S31_03240) - 641292..641528 (+) 237 WP_005712708.1 hypothetical protein -
  G5S31_RS03245 (G5S31_03245) - 641597..642493 (+) 897 WP_174221461.1 DUF692 domain-containing protein -
  G5S31_RS03250 (G5S31_03250) - 642502..643236 (+) 735 WP_078208283.1 DNA-binding domain-containing protein -
  G5S31_RS03255 (G5S31_03255) - 643240..643815 (+) 576 WP_005712702.1 sigma-70 family RNA polymerase sigma factor -
  G5S31_RS03260 (G5S31_03260) - 643817..644032 (+) 216 WP_005712699.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=372327 G5S31_RS03230 WP_005712712.1 639955..640584(-) (dinR/lexA) [Glaesserella parasuis strain aHPS7]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=372327 G5S31_RS03230 WP_005712712.1 639955..640584(-) (dinR/lexA) [Glaesserella parasuis strain aHPS7]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGGATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCCGCAAATGATGAA
GAGGGCTTGCCTTTAATTGGCAAAGTTGCAGCAGGTACGCCGATTGAGGCGATTGAACATATTGAAAAACATTATCCTGT
GAATGGAGCAATGTTTTCACCAGCCGCTGATTACCTTCTTAAGGTGAATGGGAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACCAAATCTGTTCGTAATGGGCAAGTGGTTGTCGCTCGTGTTGATGATGAAGTG
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378

Multiple sequence alignment