Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   FNL98_RS00130 Genome accession   NZ_CP041585
Coordinates   23539..23934 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1711654     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18539..28934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL98_RS13520 (FNL98_00125) - 23318..23434 (+) 117 Protein_16 competence protein ComE -
  FNL98_RS00130 (FNL98_00130) comE 23539..23934 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  FNL98_RS00140 (FNL98_00140) - 24460..24789 (-) 330 Protein_18 transposase -
  FNL98_RS00145 (FNL98_00145) dnaJ 24923..26044 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  FNL98_RS00150 (FNL98_00150) - 26239..28257 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  FNL98_RS00155 (FNL98_00155) rfbC 28301..28858 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=372326 FNL98_RS00130 WP_003703428.1 23539..23934(+) (comE) [Neisseria gonorrhoeae strain NJ1711654]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=372326 FNL98_RS00130 WP_003703428.1 23539..23934(+) (comE) [Neisseria gonorrhoeae strain NJ1711654]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment