Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FNK00_RS03060 Genome accession   NZ_CP041584
Coordinates   582616..583389 (+) Length   257 a.a.
NCBI ID   WP_002875504.1    Uniprot ID   A0A3X9APV7
Organism   Campylobacter jejuni strain YH003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 577616..588389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNK00_RS03045 (FNK00_03045) - 578465..580399 (-) 1935 WP_052823172.1 ribonuclease R family protein -
  FNK00_RS03050 (FNK00_03050) ilvC 580518..581540 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  FNK00_RS03055 (FNK00_03055) - 581544..582626 (+) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  FNK00_RS03060 (FNK00_03060) dprA 582616..583389 (+) 774 WP_002875504.1 DNA-processing protein DprA Machinery gene
  FNK00_RS03065 (FNK00_03065) ruvX 583386..583769 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  FNK00_RS03070 (FNK00_03070) - 583798..584637 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FNK00_RS03075 (FNK00_03075) msrA 584813..585296 (-) 484 Protein_589 peptide-methionine (S)-S-oxide reductase MsrA -
  FNK00_RS03080 (FNK00_03080) ppa 585338..585856 (-) 519 WP_002852138.1 inorganic diphosphatase -
  FNK00_RS03085 (FNK00_03085) adk 585866..586444 (-) 579 WP_032590860.1 adenylate kinase -
  FNK00_RS03090 (FNK00_03090) aspS 586441..588192 (-) 1752 WP_143298497.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28820.56 Da        Isoelectric Point: 6.4874

>NTDB_id=372303 FNK00_RS03060 WP_002875504.1 582616..583389(+) (dprA) [Campylobacter jejuni strain YH003]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYALPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=372303 FNK00_RS03060 WP_002875504.1 582616..583389(+) (dprA) [Campylobacter jejuni strain YH003]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAAGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGCTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X9APV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment