Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   FNK00_RS02870 Genome accession   NZ_CP041584
Coordinates   537867..538517 (-) Length   216 a.a.
NCBI ID   WP_071311243.1    Uniprot ID   A0A5Z4JQX7
Organism   Campylobacter jejuni strain YH003     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 532867..543517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNK00_RS02835 (FNK00_02835) - 533245..534249 (+) 1005 WP_079264874.1 hypothetical protein -
  FNK00_RS02840 (FNK00_02840) tlyA 534246..535007 (+) 762 WP_002902002.1 TlyA family RNA methyltransferase -
  FNK00_RS02845 (FNK00_02845) ribF 534973..535827 (+) 855 WP_002884103.1 bifunctional riboflavin kinase/FAD synthetase -
  FNK00_RS02850 (FNK00_02850) cmoA 535814..536524 (+) 711 WP_079744398.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  FNK00_RS02855 (FNK00_02855) - 536514..536735 (-) 222 WP_002859102.1 EexN family lipoprotein -
  FNK00_RS02860 (FNK00_02860) - 536732..537166 (-) 435 WP_002855128.1 EexN family lipoprotein -
  FNK00_RS02865 (FNK00_02865) - 537224..537856 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  FNK00_RS02870 (FNK00_02870) CJE0566 537867..538517 (-) 651 WP_071311243.1 DNA/RNA non-specific endonuclease Regulator
  FNK00_RS02875 (FNK00_02875) nth 538514..539140 (-) 627 WP_070313938.1 endonuclease III -
  FNK00_RS02880 (FNK00_02880) peb4 539221..540042 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  FNK00_RS02885 (FNK00_02885) fbaA 540042..541106 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  FNK00_RS02890 (FNK00_02890) - 541201..542643 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25535.25 Da        Isoelectric Point: 9.8188

>NTDB_id=372302 FNK00_RS02870 WP_071311243.1 537867..538517(-) (CJE0566) [Campylobacter jejuni strain YH003]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKTAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=372302 FNK00_RS02870 WP_071311243.1 537867..538517(-) (CJE0566) [Campylobacter jejuni strain YH003]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCTGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAACTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCGCAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z4JQX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment